An official website of the United States government
Abstract We investigate the species-level taxonomy and evolutionary history of Nearctic ants in the Crematogaster scutellaris group (Hymenoptera: Formicidae), drawing on evidence from morphology and UCE (ultraconserved element) phylogenomics. The New World species in this group form a well-supported clade that originated in the Late Miocene (~7.3 Mya) and subsequently diverged into three major lineages: the C. coarctata clade (south-western Nearctic), the C. opaca clade (south-western Nearctic and northern Neotropics) and the C. lineolata clade (eastern Nearctic and Caribbean, with four isolated south-west endemics). We hypothesize trans-Beringian dispersal into the New World, west-to-east movement within North America and restriction of mesophilic species to the east with increasing aridification of the west. The ancestral nesting behaviour of these ants is inferred to be ground-dwelling, and this is still the predominant condition in the arid west, whereas most species in the eastern United States are arboreal. We resurrect from synonymy nine species and describe three new species: C. detecta sp. nov. (from Nevada), C. parapilosa sp. nov. (Florida) and C. vetusta sp. nov. (Arizona). We provide a worker-based key to the 34 species of Crematogaster occurring in America north of Mexico, but emphasize that there are still ongoing taxonomic issues that need to be resolved.
more »
« less
First phylogenetic analysis of the Nearctic madicolous midges of the genus Androprosopa Mik (Diptera: Thaumaleidae)
Molecular phylogenetic analyses were conducted to infer relationships between the eastern and western Nearctic Androprosopa Mik and amongst the considerably more diverse western Nearctic species. Fresh, molecular-grade material was obtained for all Nearctic Androprosopa species except two Mexican species, An. sonorensis (Arnaud & Boussy) and An. zempoala Sinclair & Huerta, that eluded capture. Molecular sequences from two nuclear proteincoding genes, big zinc finger (BZF) and molybdenum cofactor sulfurase (MCS), were sampled from representatives of several outgroup and ingroup taxa and analyzed phylogenetically using maximum likelihood criteria to confirm identifications of females and immatures using a barcoding approach, test species boundaries among morphologically similar species, and infer relationships among more morphologically disparate groups. Resulting phylogenies suggest the following with significant node (bootstrap) support: (1) the eastern Nearctic Androprosopa species form the sister group to the lineage comprised of all sampled Palearctic thaumaleids, i.e., An. larvata (Mik), An. striata (Okada), and Thaumalea testacea Ruthe; (2) the aforementioned lineage is the sister group to the clade comprised of western Nearctic Androprosopa species; (3) the western Nearctic Androprosopa species form three multispecies lineages, two of which can be further divided into three or more well founded species groups. Our results suggest that Androprosopa as currently defined is paraphyletic. Additionally, we propose several new species groups within the western Nearctic Androprosopa based on molecular and morphological data.
more »
« less
- Award ID(s):
- 1949813
- PAR ID:
- 10497720
- Publisher / Repository:
- Elsevier
- Date Published:
- Journal Name:
- Molecular Phylogenetics and Evolution
- Edition / Version:
- 187
- Volume:
- 187
- Issue:
- C
- ISSN:
- 1055-7903
- Page Range / eLocation ID:
- 107807
- Subject(s) / Keyword(s):
- None.
- Format(s):
- Medium: X Size: 2.1 Other: PDF
- Size(s):
- 2.1
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Phylogenetic relationships within many lineages of the phylum Nematoda remain unresolved, despite numerous morphology-based and molecular analyses. We performed several phylogenomic analyses using 286 published genomes and transcriptomes and 19 new transcriptomes by focusing on Trichinellida, Spirurina, Rhabditina, and Tylenchina separately, and by analyzing a selection of species from the whole phylum Nematoda. The phylogeny of Trichinellida supported the division of Trichinella into encapsulated and non-encapsulated species and placed them as sister to Trichuris. The Spirurina subtree supported the clades formed by species from Ascaridomorpha and Spiruromorpha respectively, but did not support Dracunculoidea. The analysis of Tylenchina supported a clade that included all sampled species from Tylenchomorpha and placed it as sister to clades that included sampled species from Cephalobomorpha and Panagrolaimomorpha, supporting the hypothesis that postulates the single origin of the stomatostylet. The Rhabditina subtree placed a clade composed of all sampled species from Diplogastridae as sister to a lineage consisting of paraphyletic Rhabditidae, a single representative of Heterorhabditidae and a clade composed of sampled species belonging to Strongylida. It also strongly supported all suborders within Strongylida. In the phylum-wide analysis, a clade composed of all sampled species belonging to Enoplia were consistently placed as sister to Dorylaimia + Chromadoria. The topology of the Nematoda backbone was consistent with previous studies, including polyphyletic placement of sampled representatives of Monhysterida and Araeolaimida.more » « less
-
The ambush bugs (Heteroptera: Reduviidae: Phymatinae) are a diverse clade of predators known for their cryptic hunting behavior and morphologically diverse raptorial forelegs. Despite their striking appearance, role as pollinator predators, and intriguing biogeographic distribution, phylogenetic relationships within Phymatinae are largely unknown and the evolutionary history of the subfamily has remained in the dark. We here utilize the most extensive molecular phylogeny of ambush bugs to date, generated from a 3328 base pair molecular dataset, to refine our understanding of phymatine relationships, estimate dates of divergence (BEAST 2), and uncover historical biogeographic patterns (S-DIVA and DEC). This taxon set (39 species of Phymatinae and six outgroups) allowed reevaluation of the proposed sister group of Phymatinae and tribal-level relationships within the group, and for the first time proposes species-level relationships within Phymata Latreille, the largest genus of ambush bugs (∼109 spp.). Available evidence suggests that Phymata originated in the Neotropical region, with subsequent dispersals to the Nearctic and Palearctic regions. This study provides a framework for future research investigating the evolutionary history of ambush bugs, as well as ecological and microevolutionary investigations.more » « less
-
Abstract The Viridiplantae comprise two main clades, the Chlorophyta (including a diverse array of marine and freshwater green algae) and the Streptophyta (consisting of the freshwater charophytes and the land plants). Lineages sister to core Chlorophyta, informally refer to as prasinophytes, form a grade of mainly planktonic green algae. Recently, one of these lineages, Prasinodermophyta, which is previously grouped with prasinophytes, has been identified as the sister lineage to both Chlorophyta and Streptophyta. Resolving the deep relationships among green plants is crucial for understanding the historical impact of green algal diversity on marine ecology and geochemistry, but has been proven difficult given the ancient timing of the diversification events. Through extensive taxon and gene sampling, we conduct large-scale phylogenomic analyses to resolve deep relationships and reveal the Prasinodermophyta as the lineage sister to Chlorophyta, raising questions about the necessity of classifying the Prasinodermophyta as a distinct phylum. We unveil that incomplete lineage sorting is the main cause of discordance regarding the placement of Prasinodermophyta. Molecular dating analyses suggest that crown-group green plants and crown-group Prasinodermophyta date back to the Paleoproterozoic-Mesoproterozoic. Our study establishes a plausible link between oxygen levels in the Paleoproterozoic-Mesoproterozoic and the origin of Viridiplantae.more » « less
-
The landscape of western North America has dramatically transformed since the Miocene to become increasingly heterogeneous, in turn promoting the evolution of many rapidly radiating angiosperm lineages. Phylogenetic relationships of these recently and rapidly radiating groups are difficult to resolve as there is little genetic variation among species and a high degree of noise from incomplete lineage sorting and hybridization. Mentzelia section Bartonia (51 species; Loasaceae) exemplifies this problem well. The clade has been investigated with Sanger sequencing, RADSeq, and genome skimming methods, however, most species relationships remain elusive due to low genetic variability. To better infer species relationships, we applied a hybrid enrichment approach with the Angiosperms353 probe set and implemented a novel bioinformatics workflow that aimed to maximize phylogenetic signal and minimize noise from low-quality sequences, paralogy, and incomplete lineage sorting. Our phylogenomic approach increased phylogenetic resolution of species relationships compared to previous studies based on nrDNA loci. Although a few species relationships still lack strong support, our results indicate that our methods were effective in phylogenetic inference of this recently and rapidly evolving lineage from western North America. To better characterize major groups in the Section, we propose the formal designation of three subsections: Decapetala, Multicaulis, and Multiflora.more » « less
- Free Publicly Accessible Full Text
-
Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1016/j.ympev.2023.107807
