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1. Are Glyphosate‐Resistant Weeds a Threat to Conservation Agriculture? Evidence from Tillage Practices in Soybeans

   https://doi.org/10.1111/ajae.12243  

   Van Deynze, Braeden; Swinton, Scott M.; Hennessy, David A. (June 2021, American Journal of Agricultural Economics)

   null (Ed.)

   Conservation tillage in American soybean production has become increasingly common, improving soil health while reducing soil erosion and fuel consumption. This trend has been reinforced by the widespread adoption of glyphosate-based weed control systems. Many weed species have since evolved to resist glyphosate, reducing its effectiveness. We provide evidence that the spread of glyphosate-resistant weeds is responsible for significant reductions in the use of conservation tillage in soybean production. We estimate reduced-form and structural probit models of tillage choice, using a large panel of field-level soybean management decisions from across the United States spanning 1998-2016. We find that the first emergence of glyphosate-resistant weed species has little initial effect on tillage practices, though by the time that eight glyphosate-resistant weed species are identified, conservation tillage and no-till use fall by 3.9 percentage points and 7.6 percentage points, respectively. We further find that when ten glyphosate-resistant species are present, the predicted adoption rate of non-glyphosate herbicides rises 50 percentage points, and that the availability of non-glyphosate herbicides facilitates continued use of conservation tillage as glyphosate-resistant weeds proliferate. Using a simple benefits transfer model, we conservatively estimate that between 2008 and 2016 farmers' tillage responses to the spread of glyphosate-resistant weeds have caused water quality and climate damages via fuel emissions valued at nearly $245 million. This value does not account for climate damages due to carbon released during soil disruptions and is likely to grow as glyphosate resistance becomes more widespread and more farmers turn to tillage for supplemental weed control. 

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2. Root Microbiome Modulates Plant Growth Promotion Induced by Low Doses of Glyphosate

   https://doi.org/10.1128/mSphere.00484-20  

   Ramirez-Villacis, Dario X.; Finkel, Omri M.; Salas-González, Isai; Fitzpatrick, Connor R.; Dangl, Jeffery L.; Jones, Corbin D.; Leon-Reyes, Antonio (August 2020, mSphere)

   Fischer, Reinhard (Ed.)

   ABSTRACT Glyphosate is a commonly used herbicide with a broad action spectrum. However, at sublethal doses, glyphosate can induce plant growth, a phenomenon known as hormesis. Most glyphosate hormesis studies have been performed under microbe-free or reduced-microbial-diversity conditions; only a few were performed in open systems or agricultural fields, which include a higher diversity of soil microorganisms. Here, we investigated how microbes affect the hormesis induced by low doses of glyphosate. To this end, we used Arabidopsis thaliana and a well-characterized synthetic bacterial community of 185 strains (SynCom) that mimics the root-associated microbiome of Arabidopsis . We found that a dose of 3.6 × 10 −6 g acid equivalent/liter (low dose of glyphosate, or LDG) produced an ∼14% increase in the shoot dry weight (i.e., hormesis) of uninoculated plants. Unexpectedly, in plants inoculated with the SynCom, LDG reduced shoot dry weight by ∼17%. We found that LDG enriched two Firmicutes and two Burkholderia strains in the roots. These specific strains are known to act as root growth inhibitors (RGI) in monoassociation assays. We tested the link between RGI and shoot dry weight reduction in LDG by assembling a new synthetic community lacking RGI strains. Dropping RGI strains out of the community restored growth induction by LDG. Finally, we showed that individual RGI strains from a few specific phyla were sufficient to switch the response to LDG from growth promotion to growth inhibition. Our results indicate that glyphosate hormesis was completely dependent on the root microbiome composition, specifically on the presence of root growth inhibitor strains. IMPORTANCE Since the introduction of glyphosate-resistant crops, glyphosate has become the most common and widely used herbicide around the world. Due to its intensive use and ability to bind to soil particles, it can be found at low concentrations in the environment. The effect of these remnants of glyphosate in plants has not been broadly studied; however, glyphosate 1,000 to 100,000 times less concentrated than the recommended field dose promoted growth in several species in laboratory and greenhouse experiments. However, this effect is rarely observed in agricultural fields, where complex communities of microbes have a central role in the way plants respond to external cues. Our study reveals how root-associated bacteria modulate the responses of Arabidopsis to low doses of glyphosate, shifting between growth promotion and growth inhibition. 

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3. Metabolomic analysis of honey bee ( Apis mellifera L.) response to glyphosate exposure

   https://doi.org/10.1039/D2MO00046F  

   Wang, Bo; Habermehl, Calypso; Jiang, Lin (May 2022, Molecular Omics)

   Glyphosate is among the world's most commonly used herbicides in agriculture and weed control. The use of this agrochemical has unintended consequences on non-target organisms, such as honey bees ( Apis mellifera L. ), the Earth's most prominent insect pollinator. However, detailed understanding of the biological effects in bees in response to sub-lethal glyphosate exposure is still limited. In this study, 1 H NMR-based metabolomics was performed to investigate whether oral exposure to an environmentally realistic concentration (7.12 mg L −1 ) of glyphosate affects the regulation of honey bee metabolites in 2, 5, and 10 days. On Day 2 of glyphosate exposure, the honey bees showed significant downregulation of several essential amino acids, including leucine, lysine, valine, and isoleucine. This phenomenon indicates that glyphosate causes an obvious metabolic perturbation when the honey bees are subjected to the initial caging process. The mid-term (Day 5) results showed negligible metabolite-level perturbation, which indicated the low glyphosate impact on active honeybees. However, the long-term (Day 10) data showed evident separation between the control and experimental groups in the principal component analysis (PCA). This separation is the result of the combinatorial changes of essential amino acids such as threonine, histidine, and methionine, while the non-essential amino acids glutamine and proline as well as the carbohydrate sucrose were all downregulated. In summary, our study demonstrates that although no significant behavioral differences were observed in honey bees under sub-lethal doses of glyphosate, metabolomic level perturbation can be observed under short-term exposure when met with other environmental stressors or long-term exposure. 

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4. Enzymatic Laser‐Induced Graphene Biosensor for Electrochemical Sensing of the Herbicide Glyphosate

   https://doi.org/10.1002/gch2.202200057  

   Johnson, Zachary T.; Jared, Nathan; Peterson, John K.; Li, Jingzhe; Smith, Emily A.; Walper, Scott A.; Hooe, Shelby L.; Breger, Joyce C.; Medintz, Igor L.; Gomes, Carmen; et al (July 2022, Global Challenges)

   Abstract Glyphosate is a globally applied herbicide yet it has been relatively undetectable in‐field samples outside of gold‐standard techniques. Its presumed nontoxicity toward humans has been contested by the International Agency for Research on Cancer, while it has been detected in farmers’ urine, surface waters and crop residues. Rapid, on‐site detection of glyphosate is hindered by lack of field‐deployable and easy‐to‐use sensors that circumvent sample transportation to limited laboratories that possess the equipment needed for detection. Herein, the flavoenzyme, glycine oxidase, immobilized on platinum‐decorated laser‐induced graphene (LIG) is used for selective detection of glyphosate as it is a substrate for GlyOx. The LIG platform provides a scaffold for enzyme attachment while maintaining the electronic and surface properties of graphene. The sensor exhibits a linear range of 10–260µm, detection limit of 3.03µm, and sensitivity of 0.991 nAµm⁻¹. The sensor shows minimal interference from the commonly used herbicides and insecticides: atrazine, 2,4‐dichlorophenoxyacetic acid, dicamba, parathion‐methyl, paraoxon‐methyl, malathion, chlorpyrifos, thiamethoxam, clothianidin, and imidacloprid. Sensor function is further tested in complex river water and crop residue fluids, which validate this platform as a scalable, direct‐write, and selective method of glyphosate detection for herbicide mapping and food analysis. 

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5. Deciphering the Mechanism of Glyphosate Resistance in Amaranthus palmeri by Cytogenomics

   https://doi.org/10.1159/000521409  

   Koo, Dal-Hoe; Sathishraj, Rajendran; Friebe, Bernd; Gill, Bikram S. (February 2022, Cytogenetic and Genome Research)

   In agriculture, various chemicals are used to control the weeds. Out of which, glyphosate is an important herbicide invariably used in the cultivation of glyphosate-resistant crops to control weeds. Overuse of glyphosate results in the evolution of glyphosate-resistant weeds. Evolution of glyphosate resistance (GR) in Amaranthus palmeri (AP) is a serious concern in the USA. Investigation of the mechanism of GR in AP identified different resistance mechanisms of which 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) gene amplification is predominant. Molecular analysis of GR AP identified the presence of a 5- to >160-fold increase in copies of the EPSPS gene than in a glyphosate-susceptible (GS) population. This increased copy number of the EPSPS gene increased the genome size ranging from 3.5 to 11.8%, depending on the copy number compared to the genome size of GS AP. FISH analysis using a 399-kb EPSPS cassette derived from bacterial artificial chromosomes (BACs) as probes identified that amplified EPSPS copies in GR AP exist in extrachromosomal circular DNA (eccDNA) in addition to the native copy in the chromosome. The EPSPS gene-containing eccDNA having a size of ∼400 kb is termed EPSPS-eccDNA and showed somatic mosacism in size and copy number. EPSPS-eccDNA has a genetic mechanism to tether randomly to mitotic or meiotic chromosomes during cell division or gamete formation and is inherited to daughter cells or progeny generating copy number variation. These eccDNAs are stable genetic elements that can replicate and exist independently. The genomic characterization of the EPSPS locus, along with the flanking regions, identified the presence of a complex array of repeats and mobile genetic elements. The cytogenomics approach in understanding the biology of EPSPS-eccDNA sheds light on various characteristics of EPSPS-eccDNA that favor GR in AP. 

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