skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.


Title: The Role of Benthic Fluxes in Acidifying the Bottom Waters in the Northern Gulf of Mexico Hypoxic Zone Based on an Updated Water Column Biogeochemical‐Seabed Diagenetic and Sediment Transport Model
Abstract The seabed and the water column are tightly coupled in shallow coastal environments. Numerical models of seabed‐water interaction provide an alternative to observational studies that require concurrent measurements in both compartments, which are hard to obtain and rarely available. Here, we present a coupled model that includes water column biogeochemistry, seabed diagenesis, sediment transport and hydrodynamics. Our model includes realistic representations of biogeochemical reactions in both seabed and water column, and fluxes at their interface. The model was built on algorithms for seabed‐water exchange in the Regional Ocean Modeling System and expanded to include carbonate chemistry in seabed. The updated model was tested for two sites where benthic flux and porewater concentration measurements were available in the northern Gulf of Mexico hypoxic zone. The calibrated model reproduced the porewater concentration‐depth profiles and benthic fluxes of O2, dissolved inorganic carbon (DIC), TAlk, NO3and NH4. We used the calibrated model to explore the role of benthic fluxes in acidifying bottom water during fair weather and resuspension periods. Under fair weather conditions, model results indicated that bio‐diffusion in sediment, labile material input and sediment porosity have a large control on the importance of benthic flux to bottom water acidification. During resuspension, the model indicated that bottom water acidification would be enhanced due to the sharp increase of the DIC/TAlk ratio of benthic fluxes. To conclude, our model reproduced the seabed‐water column exchange of biologically important solutes and can be used for quantifying the role of benthic fluxes in driving bottom water acidification over continental shelves.  more » « less
Award ID(s):
1756788
PAR ID:
10573043
Author(s) / Creator(s):
; ; ; ; ;
Publisher / Repository:
AGU
Date Published:
Journal Name:
Journal of Advances in Modeling Earth Systems
Volume:
16
Issue:
10
ISSN:
1942-2466
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Abstract We have designed, built, tested, and deployed a novel device to extract porewater from deep‐sea sediments in situ, constructed to work with a standard multicorer. Despite the importance of porewater measurements for numerous applications, many sampling artifacts can bias data and interpretation during traditional porewater processing from shipboard‐processed cores. A well‐documented artifact occurs in deep‐sea porewater when carbonate precipitates during core recovery as a function of temperature and pressure changes, while porewater is in contact with sediment grains before filtration, thereby lowering porewater alkalinity and dissolved inorganic carbon (DIC). Here, we present a novel device built to obviate these sampling artifacts by filtering porewater in situ on the seafloor, with a focus near the sediment–water interface on cm‐scale resolution, to obtain accurate porewater profiles. We document 1–10% alkalinity loss in shipboard‐processed sediment cores compared to porewater filtered in situ, at depths of 1600–3200 m. We also show that alkalinity loss is a function of both weight % sedimentary CaCO3and water column depth. The average ratio of alkalinity loss to DIC loss in shipboard‐processed sediment cores relative to in situ porewater is 2.2, consistent with the signal expected from carbonate precipitation. In addition to collecting porewater for defining natural profiles, we also conducted the first in situ dissolution experiments within the sediment column using isotopically labeled calcite. We present evidence of successful deployments of this device on and adjacent to the Cocos Ridge in the Eastern Equatorial Pacific across a range of depths and calcite saturation states. 
    more » « less
  2. Abstract Seagrass meadows play an important role in “blue carbon” sequestration and storage, but their dynamic metabolism is not fully understood. In a denseZostera marinameadow, we measured benthic O2fluxes by aquatic eddy covariance, water column concentrations of O2, and partial pressures of CO2(pCO2) over 21 full days during peak growing season in April and June. Seagrass metabolism, derived from the O2flux, varied markedly between the 2 months as biomass accumulated and water temperature increased from 16°C to 28°C, triggering a twofold increase in respiration and a trophic shift of the seagrass meadow from being a carbon sink to a carbon source. Seagrass metabolism was the major driver of diurnal fluctuations in water column O2concentration and pCO2, ranging from 173 to 377 μmol L−1and 193 to 859 ppmv, respectively. This 4.5‐fold variation in pCO2was observed despite buffering by the carbonate system. Hysteresis in diurnal water column pCO2vs. O2concentration was attributed to storage of O2and CO2in seagrass tissue, air–water exchange of O2and CO2, and CO2storage in surface sediment. There was a ~ 1:1 mol‐to‐mol stoichiometric relationship between diurnal fluctuations in concentrations of O2and dissolved inorganic carbon. Our measurements showed no stimulation of photosynthesis at high CO2and low O2concentrations, even though CO2reached levels used in IPCC ocean acidification scenarios. This field study does not support the notion that seagrass meadows may be “winners” in future oceans with elevated CO2concentrations and more frequent temperature extremes. 
    more » « less
  3. Abstract There is limited information on how the nutrient and freshwater input affects water column carbonate chemistry in the estuaries along the northern Gulf of Mexico. In this study, we assess the seasonal and spatial variability in carbonate chemistry in the Barataria Basin, a eutrophic estuary adjacent to the mouth of the Mississippi River. Eleven stations were sampled along a salinity gradient during the winter (January), spring (April), summer (July), and fall (October) of 2021. Surface and bottom water samples were collected for the analyses of dissolved inorganic carbon (DIC); total alkalinity (TA); and nitrite plus nitrate (NO2 + NO3), phosphate (PO4), and dissolved silica (SiO4). Dissolved CO2(pCO2) was measured in the surface water. Seasonal surface DIC and TA values ranged from 1553 to 2582 μmol kg−1and 1217 to 2217 μmol kg−1, respectively. DIC and TA varied seasonally and showed an increasing trend from fresh stations to saline stations. The highest DIC and TA values were observed during the fall season, likely due to the increased contribution of DIC and TA from adjacent marshes as a result of enhanced porewater exchange. In contrast to DIC and TA, pCO2decreased with the increase of salinity. The seasonal and spatial patterns in carbonate chemistry could not be explained solely by physical mixing and reflected complex interactions between biogeochemical processes driven by nutrient supply and temperature as well as tidal flushing and material exchanges with adjacent marshes. 
    more » « less
  4. Abstract. The aquatic eddy covariance technique stands out as a powerful method for benthic O2 flux measurements in shelf environments because itintegrates effects of naturally varying drivers of the flux such as current flow and light. In conventional eddy covariance instruments, the timeshift caused by spatial separation of the measuring locations of flow and O2 concentration can produce substantial flux errors that aredifficult to correct. We here introduce a triple O2 sensor eddy covariance instrument (3OEC) that by instrument design eliminates theseerrors. This is achieved by positioning three O2 sensors around the flow measuring volume, which allows the O2concentration to be calculated at the point of the current flow measurements. The new instrument was tested in an energetic coastal environment with highly permeablecoral reef sands colonised by microphytobenthos. Parallel deployments of the 3OEC and a conventional eddy covariance system (2OEC) demonstrate thatthe new instrument produces more consistent fluxes with lower error margin. 3OEC fluxes in general were lower than 2OEC fluxes, and the nighttimefluxes recorded by the two instruments were statistically different. We attribute this to the elimination of uncertainties associated with the timeshift correction. The deployments at ∼ 10 m water depth revealed high day- and nighttime O2 fluxes despite the relatively loworganic content of the coarse sediment and overlying water. High light utilisation efficiency of the microphytobenthos and bottom currents increasingpore water exchange facilitated the high benthic production and coupled respiration. 3OEC measurements after sunset documented a gradual transfer ofnegative flux signals from the small turbulence generated at the sediment–water interface to the larger wave-dominated eddies of the overlying watercolumn that still carried a positive flux signal, suggesting concurrent fluxes in opposite directions depending on eddy size and a memory effect oflarge eddies. The results demonstrate that the 3OEC can improve the precision of benthic flux measurements, including measurements in environmentsconsidered challenging for the eddy covariance technique, and thereby produce novel insights into the mechanisms that control flux. We consider thefluxes produced by this instrument for the permeable reef sands the most realistic achievable with present-day technology. 
    more » « less
  5. Permeable sediments, which represent more than 50% of the continental shelves, have been largely neglected as a potential source of Fe in current global estimates of benthic dissolved iron Fed fluxes. There are open questions regarding the effects of a range of factors on Fed fluxes from these deposits, including seasonal dynamics and the role of bioirrigation. To address these gaps, we performed laboratory-based sediment incubation experiments with muddy sands during summer (21 °C) and winter (7 °C). We used bioirrigation mimics to inject overlying water into the permeable sediment with patterns resembling the bioirrigation activity of the prolific bioturbating polychaete,Clymenella torquata. Newly developed in-line Fe accumulators were used to estimate Fe fluxes with a recirculating set-up. We found high Fed fluxes from sandy sediments, especially in benthic chambers with simulated bioirrigation. In the winter fluxes reached 200 µmol Fed m-2 d-1 at the onset of irrigation and then decreased over the course of a 13-day experiment while in the summer fluxes from irrigated sediments reached 100 µmol Fed m-2 d-1 and remained high throughout a 7-day experiment. Despite different geochemical expressions of Fe-S cycling and resulting porewater Fed concentrations in winter and summer, large Fed fluxes were sustained during both seasons. Solid-phase and porewater concentration profiles showed that maximum concentrations of key constituents, including total solid-phase reactive Fe, and porewater Fed and ammonium, were located closer to the sediment water interface (SWI) in irrigated cores than in non-irrigated cores due to the upward advective transport of dissolved porewater constituents. This upward transport also facilitated Fed fluxes out of the sediments, especially during times of active pumping. Our study demonstrates the potential for large Fed fluxes from sandy sediments in both summer and winter, despite relatively low standing stocks of labile organic matter and porewater Fed. The primary driver of these high fluxes was advective porewater transport, in our study induced by the activity of infaunal organisms. These results suggest that permeable sediments, which dominate shelf regions, must be explicitly considered in global estimates of benthic Fed fluxes, and cannot be simply extrapolated from estimates based on muddy sediments. 
    more » « less