Heterogeneous “linkers” are incorporated into polymers for a number of reasons, most commonly to facilitate the coupling of the targeted backbone segments. Due to their inclusion in the backbone, these linkers have the potential to affect the overall properties of the copolymer, even when present in relatively low weight percentages. To characterize the degree of impact of some common linkers, a set of polymers that incorporate both degradable sequenced segments and linkers were synthesized and systematically examined. Seven sequence-controlled olefin containing ester macrocycles were prepared, each with a unique central moiety, including a five-carbon alkyl chain, diethylene glycol, a urea, a thioether, a triazole, a bioaromatic, and an extension of the ester sequence. The macrocycles were polymerized via ED-ROMP to yield seven polymers that vary only in the the linker segment. The properties of all polymers were compared to determine the relative dominance of the different linker types. The properties tested in the study included thermal behavior, mechanical characteristics, hydrolytic degradation and film qualities. The thermal and mechanical properties proved to be dependent primarily on the ability of the linker to promote interchain interactions, as well as the weight fraction of the linker, whereas the hydrolytic degradation was dominated by the relative hydrophobicity of the linker groups. In all cases, the linker identity was a significant contributer to the behavior. 
                        more » 
                        « less   
                    This content will become publicly available on July 14, 2026
                            
                            Electromechanical switching in DNA–CNT supramolecular structures
                        
                    
    
            The characteristics of the interface between DNA and metallic carbon nanotube (CNT) in supramolecular assemblies are important to understand for electronic and sensing applications. We study the mechanical stability and electronic properties of these interfaces with amino and ester linkers using computational experiments. Our study demonstrates that both linkers significantly enhance the mechanical stability of DNA–CNT systems, with the DNA adopting a stable and lower energy perpendicular orientation relative to the CNT as opposed to a conventional parallel arrangement. This lower energy configuration is driven by nonbonded interactions between the DNA base and the CNT surface. Our calculations also reveal that interface resistance is primarily governed by DNA–CNT interactions with negligible contribution from the linkers. In the case of the amino linker, we predict a 100-fold transmission ratio between parallel and perpendicular configurations of DNA relative to CNT. This observation can be used to build an electromechanical switch with fast switching times (30 ns). The ester linker, on the contrary, enables a better electronic coupling between the DNA and CNT even when strained. 
        more » 
        « less   
        
    
    
                            - PAR ID:
- 10627384
- Publisher / Repository:
- AIP
- Date Published:
- Journal Name:
- Applied Physics Letters
- Volume:
- 127
- Issue:
- 2
- ISSN:
- 0003-6951
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
- 
            
- 
            Chromatin, a dynamic protein-DNA complex that regulates eukaryotic genome accessibility and essential functions, is composed of nucleosomes connected by linker DNA with each nucleosome consisting of DNA wrapped around an octamer of histones H2A, H2B, H3 and H4. Magic angle spinning solid-state nuclear magnetic resonance (NMR) spectroscopy can yield unique insights into histone structure and dynamics in condensed nucleosomes and nucleosome arrays representative of chromatin at physiological concentrations. Recently we used J-coupling-based solid-state NMR methods to investigate with residue-specific resolution the conformational dynamics of histone H3 N-terminal tails in 16-mer nucleosome arrays containing 15, 30 or 60 bp DNA linkers. Here, we probe the H3 core domain in the 16-mer arrays as a function of DNA linker lengthviadipolar coupling-based1H-detected solid-state NMR techniques. Specifically, we established nearly complete assignments of backbone chemical shifts for H3 core residues in arrays with 15–60 bp DNA linkers reconstituted with2H,13C,15N-labeled H3. Overall, these chemical shifts were similar irrespective of the DNA linker length indicating no major changes in H3 core conformation. Notably, however, multiple residues at the H3-nucleosomal DNA interface in arrays with 15 bp DNA linkers exhibited relatively pronounced differences in chemical shifts and line broadening compared to arrays with 30 and 60 bp linkers. These findings are consistent with increased heterogeneity in nucleosome packing and structural strain within arrays containing short DNA linkers that likely leads to side-chains of these interfacial residues experiencing alternate conformations or shifts in their rotamer populations relative to arrays with the longer DNA linkers.more » « less
- 
            Abstract The formation of condensed heterochromatin is critical for establishing cell-specific transcriptional programs. To reveal structural transitions underlying heterochromatin formation in maturing mouse rod photoreceptors, we apply cryo-electron microscopy (cryo-EM) tomography, AI-assisted denoising, and molecular modeling. We find that chromatin isolated from immature retina cells contains many closely apposed nucleosomes with extremely short or absent nucleosome linkers, which are inconsistent with the typical two-start zigzag chromatin folding. In mature retina cells, the fraction of short-linker nucleosomes is much lower, supporting stronger chromatin compaction. By cryo-EM-assisted nucleosome interaction capture, we observe that chromatin in immature retina is enriched with i ± 1 interactions, while chromatin in mature retina contains predominantly i ± 2 interactions typical of the two-start zigzag. By mesoscale modeling and computational simulation, we clarify that the unusually short linkers typical of immature retina are sufficient to inhibit the two-start zigzag and chromatin compaction by the interference of very short linkers with linker DNA stems. We propose that this short linker composition renders nucleosome arrays more open in immature retina and that, as the linker DNA length increases in mature retina, chromatin becomes globally condensed via tight zigzag folding. This mechanism may be broadly utilized to introduce higher chromatin folding entropy for epigenomic plasticity.more » « less
- 
            Pseudocapacitors offer a unique strategy to combine the rapid charging rates of capacitors with the high energy density of batteries, potentially offering a unique solution to energy storage challenges. Bending and twisting aromatic building blocks to form contorted aromatics have emerged as a new strategy to create organic materials with unique and tunable properties. This paper studies the union between these two concepts: molecular contortion and organic pseudocapacitors. The recent development of fully organic pseudocapacitors, including high-performing devices based on perylene diimide organic redox units, introduces the added benefit of low cost, synthetic tunability, and increased flexibility. We synthesize a series of polymers by joining perylene diimide with various linkers that incorporate a helical moiety from [4]helicene to [6]helicene into the molecular backbone. We prepare three new electroactive polymers that incorporate benzene, naphthalene, and anthracene linkers and study their pseudocapacitive performance to infer key design principles for organic pseudocapacitors. Our results show that the naphthalene linker results in the most strongly coupled redox centers and displays the highest pseudocapacitance of 292 ± 47 F/g at 0.5 A/g. To understand the pseudocapacitive behavior, we synthesized dimer model compounds to further probe the electronic structure of these materials through electronic absorption spectroscopy and first-principles calculations. Our results suggest that the identity of the aromatic linker influences the contortion between neighboring perylene diimide units, the coupling between redox centers, and their relative angles and distances. We find that competing molecular design factors must be carefully optimized to generate high-performance devices. Overall, this study provides key insights into molecular design strategies for generating high-performing organic pseudocapacitor materials.more » « less
- 
            Abstract Design strategies to achieve degradation and ideally closed‐loop recycling of organic semiconductors have attracted great interest in order to minimize the electronic waste (E‐waste). In this work, three ester‐incorporated monomers were synthesized by the names of Thiophene‐Ester‐Ethylene‐Thiophene (TEET), Thiophene‐Ester‐Methylene‐Thiophene (TEMT), and Thiophene‐Ester‐Thiophene (TET), which were co‐polymerized via Stille polycondensation with a benzodithiophene (BnDT) π‐conjugated unit to yield a series of ester‐incorporated polymers: PBnDT‐TEET, PBnDT‐TEMT, and PBnDT‐TET. While the ester‐only linker can maintain some extended conjugation in PBnDT‐TET, the other two ester linkers having conjugation breaking units result in isolated conjugated segments in PBnDT‐TEET and PBnDT‐TEMT, evidenced by UV‐Vis and CV results. This yields an improved photovoltaic performance of PBnDT‐TET compared to PBnDT‐TEET. While all three polymers can depolymerize under methanolysis, the alternating co‐polymer PBnDT‐TEET demonstrates the highest recyclability potential with a single dimethyl ester‐functionalized product with an excellent 92 % isolated yield, which can then be repolymerized to reobtain PBnDT‐TEET with a 36 % yield. This work provides a framework towards achieving recyclable organic semiconductors to reduce E‐waste. Although the incorporation of ester linkers allowed for closed‐loop recycling, the low solar cell efficiency of PBnDT‐TEET highlights the significant challenge in achieving both recycling and high device performance.more » « less
 An official website of the United States government
An official website of the United States government 
				
			 
					 
					
