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Abstract Staphylococcus aureusis an opportunistic pathogen frequently detected in environmental waters and commonly causes skin infections to water users.S. aureusconcentrations in fresh, brackish, and marine waters are positively correlated with water turbidity. To reduce the risk ofS. aureusinfections from environmental waters,S. aureussurvival (stability and multiplication) in turbid waters needs to be investigated. The aim of this study was to measureS. aureusin turbid fresh and brackish water samples and compare the concentrations over time to determine which conditions are associated with enhancedS. aureussurvival. Eighteen samples were collected from fresh and brackish water sources from two different sites on the east side of Oʻahu, Hawaiʻi.S. aureuswas detected in microcosms for up to 71 days with standard microbial culturing techniques. On average, the greatest environmental concentrations ofS. aureuswere in high turbidity fresh waters followed by high turbidity brackish waters. Models demonstrate that salinity and turbidity significantly predict environmentalS. aureusconcentrations.S. aureuspersistence over the extent of the experiment was the greatest in high turbidity microcosms with T₉₀'s of 147.8 days in brackish waters and 80.8 days in freshwaters. This study indicates that saline, turbid waters, in the absence of sunlight, provides suitable conditions for enhanced persistence ofS. aureuscommunities that may increase the risk of exposure in environmental waters. Practitioner PointsStaphylococcus aureusconcentrations, survival, and persistence were assessed in environmental fresh and brackish waters.Experimental design preserved in situ conditions to measureS. aureussurvival.Higher initialS. aureusconcentrations were observed in fresh waters with elevated turbidity, while sustained persistence was greater in brackish waters.Water turbidity and salinity were both positively associated withS. aureusconcentrations and persistence.Climate change leads to more intense rainfall events which increase water turbidity and pathogen loading, heightening the exposure risk toS. aureus. 

In collaboration with the Center for Microbiome Analysis through Island Knowledge and Investigations (C-MĀIKI), the Hawaii EPSCoR Ike Wai project and the Hawaii Data Science Institute, a new science gateway, the C-MĀIKI gateway, was developed to support modern, interoperable and scalable microbiome data analysis. This gateway provides a web-based interface for accessing high-performance computing resources and storage to enable and support reproducible microbiome data analysis. The C-MĀIKI gateway is accelerating the analysis of microbiome data for Hawaii through ease of use and centralized infrastructure. 

Microbes are found in nearly every habitat and organism on the planet, where they are critical to host health, fitness, and metabolism. In most organisms, few microbes are inherited at birth; instead, acquiring microbiomes generally involves complicated interactions between the environment, hosts, and symbionts. Despite the criticality of microbiome acquisition, we know little about where hosts’ microbes reside when not in or on hosts of interest. Because microbes span a continuum ranging from generalists associating with multiple hosts and habitats to specialists with narrower host ranges, identifying potential sources of microbial diversity that can contribute to the microbiomes of unrelated hosts is a gap in our understanding of microbiome assembly. Microbial dispersal attenuates with distance, so identifying sources and sinks requires data from microbiomes that are contemporary and near enough for potential microbial transmission. Here, we characterize microbiomes across adjacent terrestrial and aquatic hosts and habitats throughout an entire watershed, showing that the most species-poor microbiomes are partial subsets of the most species-rich and that microbiomes of plants and animals are nested within those of their environments. Furthermore, we show that the host and habitat range of a microbe within a single ecosystem predicts its global distribution, a relationship with implications for global microbial assembly processes. Thus, the tendency for microbes to occupy multiple habitats and unrelated hosts enables persistent microbiomes, even when host populations are disjunct. Our whole-watershed census demonstrates how a nested distribution of microbes, following the trophic hierarchies of hosts, can shape microbial acquisition. 

Abstract Single‐celled microbial eukaryotes inhabit deep‐sea hydrothermal vent environments and play critical ecological roles in the vent‐associated microbial food web. 18S rRNA amplicon sequencing of diffuse venting fluids from four geographically‐ and geochemically‐distinct hydrothermal vent fields was applied to investigate community diversity patterns among protistan assemblages. The four vent fields include Axial Seamount at the Juan de Fuca Ridge, Sea Cliff and Apollo at the Gorda Ridge, all in the NE Pacific Ocean, and Piccard and Von Damm at the Mid‐Cayman Rise in the Caribbean Sea. We describe species diversity patterns with respect to hydrothermal vent field and sample type, identify putative vent endemic microbial eukaryotes, and test how vent fluid geochemistry may influence microbial community diversity. At a semi‐global scale, microbial eukaryotic communities at deep‐sea vents were composed of similar proportions of dinoflagellates, ciliates, Rhizaria, and stramenopiles. Individual vent fields supported distinct and highly diverse assemblages of protists that included potentially endemic or novel vent‐associated strains. These findings represent a census of deep‐sea hydrothermal vent protistan communities. Protistan diversity, which is shaped by the hydrothermal vent environment at a local scale, ultimately influences the vent‐associated microbial food web and the broader deep‐sea carbon cycle.