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Creators/Authors contains: "Lundberg, Emma"

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  1. This Forum brings together river restoration researchers and practitioners to stimulate debate about the recent explosion of interest in North American beaver (Castor canadensis) and beaver-related practices in North American river restoration science and management. While the beaver is described in recent literature as a low-cost, high-impact ecosystem engineer capable of minimizing the impacts of wildfire, drought, flood, and disturbance across the continent, we consider the importance of shifting from a focus on prescriptive results—on what beaver get humans—and towards engaging with beaver in relational process. Through a set of provocations that highlight the potential damage beaver fixes pose for stream restoration, for beaver, and for the lands and waters they inhabit with humans and other beings, we invite settler river scientists, river restorationists, and river thinkers to question the increasingly taken-for-granted logic of beaver as isolated creature, ecosystem engineer, and river savior; defer to the millennia of theory about beaver and their relations on this continent, partnering with beaver and with the Native peoples who have known them longest; and reconnect beaver back to people, place, and time in support of lively, dynamic, diverse, flourishing river systems across the continent. 
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    Free, publicly-accessible full text available November 1, 2025
  2. Nucleoli are multicomponent condensates defined by coexisting sub-phases. We identified distinct intrinsically disordered regions (IDRs), including acidic (D/E) tracts and K-blocks interspersed by E-rich regions, as defining features of nucleolar proteins. We show that the localization preferences of nucleolar proteins are determined by their IDRs and the types of RNA or DNA binding domains they encompass. In vitro reconstitutions and studies in cells showed how condensation, which combines binding and complex coacervation of nucleolar components, contributes to nucleolar organization. D/E tracts of nucleolar proteins contribute to lowering the pH of co-condensates formed with nucleolar RNAs in vitro. In cells, this sets up a pH gradient between nucleoli and the nucleoplasm. By contrast, juxta-nucleolar bodies, which have different macromolecular compositions, featuring protein IDRs with very different charge profiles, have pH values that are equivalent to or higher than the nucleoplasm. Our findings show that distinct compositional specificities generate distinct physicochemical properties for condensates. 
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  3. Free, publicly-accessible full text available December 1, 2025
  4. Stream restoration has become an increasingly important focus in southwestern Wisconsin's Driftless Area, an unglaciated, hilly pocket of the Upper Mississippi River Basin rich in groundwater-driven coldwater streams, recreationally important trout species, and agricultural communities. Climate change is driving a major increase in precipitation and flooding across this rural and often under-resourced region, effects complicated by the ongoing legacies of white settlement and the changes it wrought to area streams, including the burial of floodplains in sediment displaced off area hillslopes. As managers work to consider how to “restore” Driftless streams, riparian vegetation—grass versus trees—has become a central and surprisingly controversial node. Current stream restoration practice typically includes the removal of riparian trees, though that practice has come under increasing criticism. Grounded in more than 5 years of qualitative and biophysical fieldwork in the region, we build from interviews gathered with 18 Driftless Area stream restoration managers from 2018 to 2020 to point to the ways that managers leverage arguments about erosion, flooding, habitat, and angler access, among other things, in service of grass and trees. Indexing the surface flows and underflows of this restoration debate, we introduce the rhetorical concept of the proxy debate to argue that debates about grass versus trees are tethered to competing perspectives on scale, temporality, and dynamism, surficial distractions from much deeper anxieties about what a stream is and should be. We turn to the ways that these distractions serve to further distance the stream restoration enterprise from acknowledging the ongoing human and hydrologic legacies of settler colonialism, and we close by suggesting that careful attention to rhetorical power—both to what arguments say and do, and to what they elide—offers a tentative first step toward restoring lands and relations by questioning what is taken for granted and what lies beneath. 
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  5. Abstract The Human Proteome Organization (HUPO) launched the Human Proteome Project (HPP) in 2010, creating an international framework for global collaboration, data sharing, quality assurance and enhancing accurate annotation of the genome-encoded proteome. During the subsequent decade, the HPP established collaborations, developed guidelines and metrics, and undertook reanalysis of previously deposited community data, continuously increasing the coverage of the human proteome. On the occasion of the HPP’s tenth anniversary, we here report a 90.4% complete high-stringency human proteome blueprint. This knowledge is essential for discerning molecular processes in health and disease, as we demonstrate by highlighting potential roles the human proteome plays in our understanding, diagnosis and treatment of cancers, cardiovascular and infectious diseases. 
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