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  1. Aquatic ecologists are integrating mixotrophic plankton – here defined as microorganisms with photosynthetic and phagotrophic capacity – into their understanding of marine food webs and biogeochemical cycles. Understanding mixotroph temporal and spatial distributions, as well as the environmental conditions under which they flourish, is imperative to understanding their impact on trophic transfer and biogeochemical cycling. Mixotrophs are hypothesized to outcompete strict photoautotrophs and heterotrophs when either light or nutrients are limiting, but testing this hypothesis has been hindered by the challenge of identifying and quantifying mixotrophs in the field. Using field observations from a multi-decadal northern North Atlantic dataset, we calculated the proportion of organisms that are considered mixotrophs within individual microplankton samples. We also calculated a “trophic index” that represents the relative proportions of photoautotrophs (phytoplankton), mixotrophs, and heterotrophs (microzooplankton) in each sample. We found that the proportion of mixotrophs was positively correlated with temperature, and negatively with either light or inorganic nutrient concentration. This proportion was highest during summertime thermal stratification and nutrient limitation, and lowest during the North Atlantic spring bloom period. Between 1958 and 2015, changes in the proportion of mixotrophs coincided with changes in the Atlantic Multi-decadal Oscillation (AMO), was highest when the AMO was positive, and showed a significant uninterrupted increase in offshore regions from 1992-2015. This study provides an empirical foundation for future experimental, time series, and modeling studies of aquatic mixotrophs.

     
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    Free, publicly-accessible full text available March 13, 2025
  2. Frequency-domain probe beam deflection (FD-PBD) is an experimental technique for measuring thermal properties that combines heating by a modulated pump laser and measurement of the temperature field via thermoelastic displacement of the sample surface. In the conventional implementation of FD-PBD, the data are mostly sensitive to the in-plane thermal diffusivity. We describe an extension of FD-PBD that introduces sensitivity to through-plane thermal conductance by immersing the sample in a dielectric liquid and measuring the beam deflection created by the temperature field of the liquid. We demonstrate the accuracy of the method by measuring (1) the thermal conductivity of a 310 nm thick thermally grown oxide on Si, (2) the thermal boundary conductance of bonded interface between a 3C-SiC film and a single crystal diamond substrate, and (3) the thermal conductivities of several bulk materials. We map the thermal boundary conductance of a 3C-SiC/diamond interface with a precision of 1% using a lock-in time constant of 3 ms and dwell time of 15 ms. The spatial resolution and maximum probing depth are proportional to the radius of the focused laser beams and can be varied over the range of 1–20 μm and 4–80 μm, respectively, by varying the 1/e2 intensity radius of the focused laser beams from 2 to 40 μm. FD-PBD with liquid immersion thus enables fast mapping of spatial variations in thermal boundary conductance of deeply buried interfaces.

     
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    Free, publicly-accessible full text available January 22, 2025
  3. Holographic particle characterization treats holographic microscopy of colloidal particles as an inverse problem whose solution yields the diameter, refractive index and three-dimensional position of each particle in the field of view, all with exquisite precision. This rich source of information on the composition and dynamics of colloidal dispersions has created new opportunities for fundamental research in soft-matter physics, statistical physics and physical chemistry, and has been adopted for product development, quality assurance and process control in industrial applications. Aberrations introduced by real-world imaging conditions, however, can degrade performance by causing systematic and correlated errors in the estimated parameters. We identify a previously overlooked source of spherical aberration as a significant source of these errors. Modeling aberration-induced distortions with an operator-based formalism identifies a spatially varying phase factor that approximately compensates for spherical aberration in recorded holograms. Measurements on model colloidal dispersions demonstrate that phase-only aberration compensation greatly improves the accuracy of holographic particle characterization without significantly affecting measurement speed for high-throughput applications.

     
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  4. Abstract

    Adaptive management is an approach for stewardship of social–ecological systems in circumstances with high uncertainty and high controllability. Although they are largely overlooked in adaptive management (and social–ecological system management), it is important to account for spatial and temporal scales to mediate within- and cross-scale effects of management actions, because cross-scale interactions increase uncertainty and can lead to undesirable consequences. The iterative nature of an adaptive approach can be expanded to multiple scales to accommodate different stakeholder priorities and multiple ecosystem attributes. In this Forum, we introduce multiscale adaptive management of social–ecological systems, which merges adaptive management with panarchy (a multiscale model of social–ecological systems) and demonstrate the importance of this approach with case studies from the Great Plains of North America and the Platte River Basin, in the United States. Adaptive management combined with a focus on the panarchy model of social–ecological systems can help to improve the management of social–ecological systems.

     
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    Free, publicly-accessible full text available November 3, 2024
  5. Free, publicly-accessible full text available September 4, 2024
  6. Free, publicly-accessible full text available September 4, 2024
  7. In this paper, we present an efficient strategy to enumerate the number of k-cycles, g≤k<2g, in the Tanner graph of a quasi-cyclic low-density parity-check (QC-LDPC) code with girth g using its polynomial parity-check matrix H. This strategy works for both (dv,dc)-regular and irregular QC-LDPC codes. In this approach, we note that the mth power of the polynomial adjacency matrix can be used to describe walks of length m in the protograph and can therefore be sufficiently described by the matrices Bm(H)(HHT)m/2H(m2), where m≥0. We provide formulas for the number of k-cycles, Nk, by just taking into account repetitions in some multisets constructed from the matrices Bm(H). This approach is shown to have low complexity. For example, in the case of QC-LDPC codes based on the 3×nv fully-connected protograph, the complexity of determining Nk, for k=4,6,8,10 and 12, is O(nv2log(N)), O(nv2log(nv)log(N)), O(nv4log4(nv)log(N)), O(nv4log(nv)log(N)) and O(nv6log6(nv)log(N)), respectively. The complexity, depending logarithmically on the lifting factor N, gives our approach, to the best of our knowledge, a significant advantage over previous works on the cycle distribution of QC-LDPC codes. 
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    Free, publicly-accessible full text available September 14, 2024
  8. Free, publicly-accessible full text available September 4, 2024
  9. In this paper, we investigate the problem of decoder error propagation for spatially coupled low-density parity-check (SC-LDPC) codes with sliding window decoding (SWD). This problem typically manifests itself at signal-to-noise ratios (SNRs) close to capacity under low-latency operating conditions. In this case, infrequent but severe decoder error propagation can sometimes occur. To help understand the error propagation problem in SWD of SC-LDPC codes, a multi-state Markov model is developed to describe decoder behavior and to analyze the error performance of spatially coupled LDPC codes under these conditions. We then present two approaches -check node (CN) doping and variable node (VN) doping -to combating decoder error propagation and improving decoder performance. Next we describe how the performance can be further improved by employing an adaptive approach that depends on the availability of a noiseless binary feedback channel. To illustrate the effectiveness of the doping techniques, we analyze the error performance of CN doping and VN doping using the multi-state decoder model. We then present computer simulation results showing that CN and VN doping significantly improve the performance in the operating range of interest at a cost of a small rate loss and that adaptive doping further improves the performance. We also show that the rate loss is always less than that resulting from encoder termination and can be further reduced by doping only a fraction of the VNs at each doping position in the code graph with only a minor impact on performance. Finally, we show how the encoding problem for VN doping can be greatly simplified by doping only systematic bits, with little or no performance loss. 
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    Free, publicly-accessible full text available September 7, 2024
  10. We examined how 5- to 8-year-olds ( N = 51; Mage= 83 months; 27 female, 24 male; 69% White, 12% Black/African American, 8% Asian/Asian American, 6% Hispanic, 6% not reported) and adults ( N = 18; Mage= 20.13 years; 11 female, 7 male) accepted or rejected different distributions of resources between themselves and others. We used a reach-tracking method to track finger movement in 3D space over time. This allowed us to dissociate two inhibitory processes. One involved pausing motor responses to detect conflict between observed information and how participants thought resources should be divided; the other involved resolving the conflict between the response and the alternative. Reasoning about disadvantageous inequities involved more of the first system, and this was stable across development. Reasoning about advantageous inequities involved more of the second system and showed more of a developmental progression. Generally, reach tracking offers an on-line measure of inhibitory control for the study of cognition.

     
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