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Bayesian inference provides a systematic framework for integration of data with mathematical models to quantify the uncertainty in the solution of the inverse problem. However, the solution of Bayesian inverse problems governed by complex forward models described by partial differential equations (PDEs) remains prohibitive with black-box Markov chain Monte Carlo (MCMC) methods. We present hIPPYlib-MUQ, an extensible and scalable software framework that contains implementations of state-of-the art algorithms aimed to overcome the challenges of high-dimensional, PDE-constrained Bayesian inverse problems. These algorithms accelerate MCMC sampling by exploiting the geometry and intrinsic low-dimensionality of parameter space via derivative information and low rank approximation. The software integrates two complementary open-source software packages, hIPPYlib and MUQ. hIPPYlib solves PDE-constrained inverse problems using automatically-generated adjoint-based derivatives, but it lacks full Bayesian capabilities. MUQ provides a spectrum of powerful Bayesian inversion models and algorithms, but expects forward models to come equipped with gradients and Hessians to permit large-scale solution. By combining these two complementary libraries, we created a robust, scalable, and efficient software framework that realizes the benefits of each and allows us to tackle complex large-scale Bayesian inverse problems across a broad spectrum of scientific and engineering disciplines. To illustrate the capabilities of hIPPYlib-MUQ, we present a comparison of a number of MCMC methods available in the integrated software on several high-dimensional Bayesian inverse problems. These include problems characterized by both linear and nonlinear PDEs, various noise models, and different parameter dimensions. The results demonstrate that large (∼ 50×) speedups over conventional black box and gradient-based MCMC algorithms can be obtained by exploiting Hessian information (from the log-posterior), underscoring the power of the integrated hIPPYlib-MUQ framework. 

Abstract Obtaining lightweight and accurate approximations of discretized objective functional Hessians in inverse problems governed by partial differential equations (PDEs) is essential to make both deterministic and Bayesian statistical large-scale inverse problems computationally tractable. The cubic computational complexity of dense linear algebraic tasks, such as Cholesky factorization, that provide a means to sample Gaussian distributions and determine solutions of Newton linear systems is a computational bottleneck at large-scale. These tasks can be reduced to log-linear complexity by utilizing hierarchical off-diagonal low-rank (HODLR) matrix approximations. In this work, we show that a class of Hessians that arise from inverse problems governed by PDEs are well approximated by the HODLR matrix format. In particular, we study inverse problems governed by PDEs that model the instantaneous viscous flow of ice sheets. In these problems, we seek a spatially distributed basal sliding parameter field such that the flow predicted by the ice sheet model is consistent with ice sheet surface velocity observations. We demonstrate the use of HODLR Hessian approximation to efficiently sample the Laplace approximation of the posterior distribution with covariance further approximated by HODLR matrix compression. Computational studies are performed which illustrate ice sheet problem regimes for which the Gauss–Newton data-misfit Hessian is more efficiently approximated by the HODLR matrix format than the low-rank (LR) format. We then demonstrate that HODLR approximations can be favorable, when compared to global LR approximations, for large-scale problems by studying the data-misfit Hessian associated with inverse problems governed by the first-order Stokes flow model on the Humboldt glacier and Greenland ice sheet. 

Abstract The replacement of a nonlinear parameter-to-observable mapping with a linear (affine) approximation is often carried out to reduce the computational costs associated with solving large-scale inverse problems governed by partial differential equations (PDEs). In the case of a linear parameter-to-observable mapping with normally distributed additive noise and a Gaussian prior measure on the parameters, the posterior is Gaussian. However, substituting an accurate model for a (possibly well justified) linear surrogate model can give misleading results if the induced model approximation error is not accounted for. To account for the errors, the Bayesian approximation error (BAE) approach can be utilised, in which the first and second order statistics of the errors are computed via sampling. The most common linear approximation is carried out via linear Taylor expansion, which requires the computation of (Fréchet) derivatives of the parameter-to-observable mapping with respect to the parameters of interest. In this paper, we prove that the (approximate) posterior measure obtained by replacing the nonlinear parameter-to-observable mapping with a linear approximation is in fact independent of the choice of the linear approximation when the BAE approach is employed. Thus, somewhat non-intuitively, employing the zero-model as the linear approximation gives the same approximate posterior as any other choice of linear approximations of the parameter-to-observable model. The independence of the linear approximation is demonstrated mathematically and illustrated with two numerical PDE-based problems: an inverse scattering type problem and an inverse conductivity type problem. 

Second order, Newton-like algorithms exhibit convergence properties superior to gradient-based or derivative-free optimization algorithms. However, deriving and computing second order derivatives--needed for the Hessian-vector product in a Krylov iteration for the Newton step--often is not trivial. Second order adjoints provide a systematic and efficient tool to derive second derivative infor- mation. In this paper, we consider equality constrained optimization problems in an infinite-dimensional setting. We phrase the optimization problem in a general Banach space framework and derive second order sensitivities and second order adjoints in a rigorous and general way. We apply the developed framework to a partial differential equation-constrained optimization problem.