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Effects of climate change‐driven disturbance on lake ecosystems can be subtle; indirect effects include increased nutrient loading that could impact ecosystem function. We designed a low‐level fertilization experiment to mimic persistent, climate change‐driven disturbances (deeper thaw, greater weathering, or thermokarst failure) delivering nutrients to arctic lakes. We measured responses of pelagic trophic levels over 12 yr in a fertilized deep lake with fish and a shallow fishless lake, compared to paired reference lakes, and monitored recovery for 6 yr. Relative to prefertilization in the deep lake, we observed a maximum pelagic response in chla(+201%), dissolved oxygen (DO, −43%), and zooplankton biomass (+88%) during the fertilization period (2001–2012). Other responses to fertilization, such as water transparency and fish relative abundance, were delayed, but both ultimately declined. Phyto‐ and zooplankton biomass and community composition shifted with fertilization. The effects of fertilization were less pronounced in the paired shallow lakes, because of a natural thermokarst failure likely impacting the reference lake. In the deep lake there was (a) moderate resistance to change in ecosystem functions at all trophic levels, (b) eventual responses were often nonlinear, and (c) postfertilization recovery (return) times were most rapid at the base of the food web (2–4 yr) while higher trophic levels failed to recover after 6 yr. The timing and magnitude of responses to fertilization in these arctic lakes were similar to responses in other lakes, suggesting indirect effects of climate change that modify nutrient inputs may affect many lakes in the future.

 

Once thawed, up to 15% of the ∼1,000 Pg of organic carbon (C) in arctic permafrost soils may be oxidized to carbon dioxide (CO₂) by 2,100, amplifying climate change. However, predictions of this amplification strength ignore the oxidation of permafrost C to CO₂in surface waters (photomineralization). We characterized the wavelength dependence of permafrost dissolved organic carbon (DOC) photomineralization and demonstrate that iron catalyzes photomineralization of old DOC (4,000–6,300 a BP) derived from soil lignin and tannin. Rates of CO₂production from photomineralization of permafrost DOC are twofold higher than for modern DOC. Given that model predictions of future net loss of ecosystem C from thawing permafrost do not include the loss of CO₂to the atmosphere from DOC photomineralization, current predictions of an average of 208 Pg C loss by 2,299 may be too low by ~14%.

 

Warming and thawing in the Arctic are promoting biogeochemical processing and hydrologic transport in carbon‐rich permafrost and soils that transfer carbon to surface waters or the atmosphere. Hydrologic and biogeochemical impacts of thawing are challenging to predict with sparse information on arctic soil hydraulic and thermal properties. We developed empirical and statistical models of soil properties for three main strata in the shallow, seasonally thawed soils above permafrost in a study area of ~7,500 km²in Alaska. The models show that soil vertical stratification and hydraulic properties are predictable based on vegetation cover and slope. We also show that the distinct hydraulic and thermal properties of each soil stratum can be predicted solely from bulk density. These findings fill the gap for a sparsely mapped region of the Arctic and enable regional interpolation of soil properties critical for determining future hydrologic responses and the fate of carbon in thawing permafrost.

 

Microbes and sunlight convert terrigenous dissolved organic matter (DOM) in surface waters to greenhouse gases. Prior studies show contrasting results about how biological and photochemical processes interact to contribute to the degradation of DOM. In this study, DOM leached from the organic layer of tundra soil was exposed to natural sunlight or kept in the dark, incubated in the dark with the natural microbial community, and analysed for gene expression and DOM chemical composition. Microbial gene expression (metatranscriptomics) in light and dark treatments diverged substantially after 4 h. Gene expression suggested that sunlight exposure of DOM initially stimulated microbial growth by (i) replacing the function of enzymes that degrade higher molecular weight DOM such as enzymes for aromatic carbon degradation, oxygenation, and decarboxylation, and (ii) releasing low molecular weight compounds and inorganic nutrients from DOM. However, growth stimulation following sunlight exposure of DOM came at a cost. Sunlight depleted the pool of aromatic compounds that supported microbial growth in the dark treatment, ultimately causing slower growth in the light treatment over 5 days. These first measurements of microbial metatranscriptomic responses to photo‐alteration of DOM provide a mechanistic explanation for how sunlight exposure of terrigenous DOM alters microbial processing and respiration of DOM.

 

Lateral inflows control the spatial distribution of river discharge, and understanding their patterns is fundamental for accurately modelling instream flows and travel time distributions necessary for evaluating impacts of climate change on aquatic habitat suitability, river energy budgets, and fate of dissolved organic carbon. Yet, little is known about the spatial distribution of lateral inflows in Arctic rivers given the lack of gauging stations. With a network of stream gauging and meteorological stations within the Kuparuk River watershed in northern Alaska, we estimated precipitation and lateral inflows for nine subcatchments from 1 July to 4 August,2013, 2014, and 2015. Total precipitation, lateral inflows, runoff ratios (area‐normalized lateral inflow divided by precipitation), percent contribution to total basin discharge, and lateral inflow per river kilometre were estimated for each watershed for relatively dry, moderate, or wet summers. The results show substantial variability between years and subcatchments. Total basin lateral inflow depths ranged 24‐fold in response to a threefold change in rainfall between dry and wet years, whereas within‐basin lateral inflows varied fivefold from the coastal plain to the foothills. General spatial trends in lateral inflows were consistent with previous studies and mean summer precipitation patterns. However, the spatially distributed nature of these estimates revealed that reaches in the vicinity of a spring‐fed surficial ice feature do not follow general spatial trends and that the coastal plain, which is typically considered to produce minimal runoff, showed potential to contribute to total river discharge. These findings are used to provide a spatially distributed understanding of lateral inflows and identify watershed characteristics that influence hydrologic responses.

 

The external drivers and internal controls of groundwater flow in the thawed “active layer” above permafrost are poorly constrained because they are dynamic and spatially variable. Understanding these controls is critical because groundwater can supply solutes such as dissolved organic matter to surface water bodies. We calculated steady‐state three‐dimensional suprapermafrost groundwater flow through the active layer using measurements of aquifer geometry, saturated thickness, and hydraulic properties collected from two major landscape types over time within a first‐order Arctic watershed. The depth position and thickness of the saturated zone is the dominant control of groundwater flow variability between sites and during different times of year. The effect of water table depth on groundwater flow dwarfs the effect of thaw depth. In landscapes with low land‐surface slopes (2–4%), a combination of higher water tables and thicker, permeable peat deposits cause relatively constant groundwater flows between the early and late thawed seasons. Landscapes with larger land‐surface slopes (4–10%) have both deeper water tables and thinner peat deposits; here the commonly observed permeability decrease with depth is more pronounced than in flatter areas, and groundwater flows decrease significantly between early and late summer as the water table drops. Groundwater flows are also affected by microtopographic features that retain groundwater that could otherwise be released as the active layer deepens. The dominant sources of groundwater, and thus dissolved organic matter, are likely wet, flatter regions with thick organic layers. This finding informs fluid flow and solute transport dynamics for the present and future Arctic.

 

Soil anoxia is common in the annually thawed surface (‘active’) layer of permafrost soils, particularly when soils are saturated, and supports anaerobic microbial metabolism and methane (CH4) production. Rainfall contributes to soil saturation, but can also introduce oxygen, causing soil oxidation and altering anoxic conditions. We simulated a rainfall event in soil mesocosms from two dominant tundra types, tussock tundra and wet sedge tundra, to test the impacts of rainfall‐induced soil oxidation on microbial communities and their metabolic capacity for anaerobic CH4 production and aerobic respiration following soil oxidation. In both types, rainfall increased total soil O2 concentration, but in tussock tundra there was a 2.5‐fold greater increase in soil O2 compared to wet sedge tundra due to differences in soil drainage. Metagenomic and metatranscriptomic analyses found divergent microbial responses to rainfall between tundra types. Active microbial taxa in the tussock tundra community, including bacteria and fungi, responded to rainfall with a decline in gene expression for anaerobic metabolism and a concurrent increase in gene expression for cellular growth. In contrast, the wet sedge tundra community showed no significant changes in microbial gene expression from anaerobic metabolism, fermentation, or methanogenesis following rainfall, despite an initial increase in soil O2 concentration. These results suggest that rainfall induces soil oxidation and enhances aerobic microbial respiration in tussock tundra communities but may not accumulate or remain in wet sedge tundra soils long enough to induce a community‐wide shift from anaerobic metabolism. Thus, rainfall may serve only to maintain saturated soil conditions that promote CH4 production in low‐lying wet sedge tundra soils across the Arctic. 

In sunlit waters, photodegradation of dissolved organic matter (DOM) yields completely oxidized carbon ( i.e. , CO 2 ) as well as a suite of partially oxidized compounds formed from oxygen incorporation ( i.e. , partial photo-oxidation). Of these two groups of DOM photo-products, more studies focus on CO 2 (a greenhouse gas) than on partially oxidized DOM, which is likely a diverse group of compounds with poorly constrained roles in aquatic carbon cycling or biogeochemistry. The objective of this study is to address knowledge gaps on the prevalence, products, and pathways of DOM partial photo-oxidation. Here we traced the photochemical incorporation of isotopically labelled 18 O 2 into DOM isolated from Alaskan Arctic surface waters using high-resolution mass spectrometry. Complete and partial photo-oxidation of DOM was also quantified as CO 2 production and O 2 consumption. The majority of 18 O-containing partial oxidation photo-products were classified as carboxylic rich alicyclic molecules (CRAM) and overlapped in composition with previously reported photo-products known to result from the oxidation of DOM by singlet oxygen. These results support a previously proposed hypothesis that photo-oxidation by singlet oxygen may contribute to the formation of CRAM, a compound class of DOM ubiquitously observed in surface waters. The novel application of an isotopic tracer for oxygen incorporation with a mass balance approach to quantify complete and partial photo-oxidation of DOM revealed that less than one mol of O 2 is required to produce one mol of CO 2 . A sensitivity analysis based on this new knowledge demonstrated that the magnitude of DOM partial photo-oxidation may be underestimated by up to four-fold. Consequently, partial photo-oxidation likely plays a more prominent role in shaping DOM composition in sunlit waters of the Arctic than previously understood. Therefore, partial photo-oxidation should be increasingly incorporated into the experimental framework of studies focused on DOM composition in surface waters. 

Accelerated warming in the Arctic has led to concern regarding the amount of carbon emission potential from Arctic water bodies. Yet, aquatic carbon dioxide (CO 2 ) and methane (CH 4 ) flux measurements remain scarce, particularly at high resolution and over long periods of time. Effluxes of methane (CH 4 ) and carbon dioxide (CO 2 ) from Toolik Lake, a deep glacial lake in northern Alaska, were measured for the first time with the direct eddy covariance (EC) flux technique during six ice-free lake periods (2010–2015). CO 2 flux estimates from the lake (daily average efflux of 16.7 ± 5.3 mmol m −2 d −1 ) were in good agreement with earlier estimates from 1975–1989 using different methods. CH 4 effluxes in 2010–2015 (averaging 0.13 ± 0.06 mmol m −2 d −1 ) showed an interannual variation that was 4.1 times greater than median diel variations, but mean fluxes were almost one order of magnitude lower than earlier estimates obtained from single water samples in 1990 and 2011–2012. The overall global warming potential (GWP) of Toolik Lake is thus governed mostly by CO 2 effluxes, contributing 86–93% of the ice-free period GWP of 26–90 g CO 2,eq m −2 . Diel variation in fluxes was also important, with up to a 2-fold (CH 4 ) to 4-fold (CO 2 ) difference between the highest nighttime and lowest daytime effluxes. Within the summer ice-free period, on average, CH 4 fluxes increased 2-fold during the first half of the summer, then remained almost constant, whereas CO 2 effluxes remained almost constant over the entire summer, ending with a linear increase during the last 1–2 weeks of measurements. Due to the cold bottom temperatures of this 26 m deep lake, and the absence of ebullition and episodic flux events, Toolik Lake and other deep glacial lakes are likely not hot spots for greenhouse gas emissions, but they still contribute to the overall GWP of the Arctic. 

Photomineralization, the transformation of dissolved organic carbon (DOC) to CO 2 by sunlight, is an important source of CO 2 in arctic surface waters. However, quantifying the role of photomineralization in inland waters is limited by the understanding of hydrologic controls on this process. To bridge this gap, this study evaluates mixing limitations, i.e. , whether and by how much vertical mixing limits the depth-integrated photomineralization rate, in freshwater systems. We developed a conceptual model to qualitatively assess mixing limitations across the range of light attenuation and hydrologic conditions observed in freshwaters. For the common case of exponential light attenuation over depth, we developed a mathematical model to quantify mixing limitation, and used this model to assess a range of arctic freshwater systems. The results demonstrate that mixing limitations are important when there is significant light attenuation by suspended sediment (SS), which is the case in some arctic, boreal and temperate waters. Mixing limitation is pronounced when light attenuation over depth is strong and when the photomineralization rate at the water surface exceeds the vertical mixing rate. Arctic streams and rivers have strong vertical mixing relative to surface photomineralization, such that model results demonstrate no mixing limitation regardless of how much SS is present. Our analysis indicates that well-mixed assumptions used in prior work are valid in many, but not all, arctic surface waters. The effects of mixing limitations in reducing the photomineralization rate must be considered in arctic lakes with high SS concentrations.