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Fully Homomorphic Encryption over the Torus (TFHE) allows arbitrary computations to happen directly on ciphertexts using homomorphic logic gates. However, each TFHE gate on state-of-the-art hardware platforms such as GPUs and FPGAs is extremely slow (> 0.2ms). Moreover, even the latest FPGA-based TFHE accelerator cannot achieve high energy efficiency, since it frequently invokes expensive double-precision floating point FFT and IFFT kernels. In this paper, we propose a fast and energy-efficient accelerator, MATCHA, to process TFHE gates. MATCHA supports aggressive bootstrapping key unrolling to accelerate TFHE gates without decryption errors by approximate multiplication-less integer FFTs and IFFTs, and a pipelined datapath. Compared to prior accelerators, MATCHA improves the TFHE gate processing throughput by 2.3x, and the throughput per Watt by 6.3x.

Ultra-fast & low-power superconductor single-flux-quantum (SFQ)-based CNN systolic accelerators are built to enhance the CNN inference throughput. However, shift-register (SHIFT)-based scratchpad memory (SPM) arrays prevent a SFQ CNN accelerator from exceeding 40% of its peak throughput, due to the lack of random access capability. This paper first documents our study of a variety of cryogenic memory technologies, including Vortex Transition Memory (VTM), Josephson-CMOS SRAM, MRAM, and Superconducting Nanowire Memory, during which we found that none of the aforementioned technologies made a SFQ CNN accelerator achieve high throughput, small area, and low power simultaneously. Second, we present a heterogeneous SPM architecture, SMART, composed of SHIFT arrays and a random access array to improve the inference throughput of a SFQ CNN systolic accelerator. Third, we propose a fast, low-power and dense pipelined random access CMOS-SFQ array by building SFQ passive-transmission-line-based H-Trees that connect CMOS sub-banks. Finally, we create an ILP-based compiler to deploy CNN models on SMART. Experimental results show that, with the same chip area overhead, compared to the latest SHIFT-based SFQ CNN accelerator, SMART improves the inference throughput by 3.9 × (2.2 ×), and reduces the inference energy by 86% (71%) when inferring a single image (a batch of images).

Recently Homomorphic Encryption (HE) is used to implement Privacy-Preserving Neural Networks (PPNNs) that perform inferences directly on encrypted data without decryption. Prior PPNNs adopt mobile network architectures such as SqueezeNet for smaller computing overhead, but we find naïvely using mobile network architectures for a PPNN does not necessarily achieve shorter inference latency. Despite having less parameters, a mobile network architecture typically introduces more layers and increases the HE multiplicative depth of a PPNN, thereby prolonging its inference latency. In this paper, we propose a \textbf{HE}-friendly privacy-preserving \textbf{M}obile neural n\textbf{ET}work architecture, \textbf{HEMET}. Experimental results show that, compared to state-of-the-art (SOTA) PPNNs, HEMET reduces the inference latency by $59.3%\sim 61.2%$, and improves the inference accuracy by $0.4 % \sim 0.5%$.

Genomics is the foundation of precision medicine, global food security and virus surveillance. Exact-match is one of the most essential operations widely used in almost every step of genomics such as alignment, assembly, annotation, and compression. Modern genomics adopts Ferragina-Manzini Index (FMIndex) augmenting space-efficient Burrows-Wheeler transform (BWT) with additional data structures to permit ultra-fast exact-match operations. However, FM-Index is notorious for its poor spatial locality and random memory access pattern. Prior works create GPU-, FPGA-, ASIC- and even process-in-memory (PIM)based accelerators to boost FM-Index search throughput. Though they achieve the state-of-the-art FM-Index search throughput, the same as all prior conventional accelerators, FM-Index PIMs process only one DNA symbol after each DRAM row activation, thereby suffering from poor memory bandwidth utilization. In this paper, we propose a hardware accelerator, EXMA, to enhance FM-Index search throughput. We first create a novel EXMA table with a multi-task-learning (MTL)-based index to process multiple DNA symbols with each DRAM row activation. We then build an accelerator to search over an EXMA table. We propose 2-stage scheduling to increase the cache hit rate of our accelerator. We introduce dynamic page policy to improve the row buffer hit rate of DRAM main memory. We also present CHAINmore »compression to reduce the data structure size of EXMA tables. Compared to state-of-the-art FM-Index PIMs, EXMA improves search throughput by 4.9 ×, and enhances search throughput per Watt by 4.8×.« less

Homomorphic encryption (HE) and garbled circuit (GC) provide the protection for users’ privacy. However, simply mixing the HE and GC in RNN models suffer from long inference latency due to slow activation functions. In this paper, we present a novel hybrid structure of HE and GC gated recurrent unit (GRU) network, , for low-latency secure inferences. replaces computationally expensive GC-based tanh with fast GC-based ReLU, and then quantizes sigmoid and ReLU to smaller bit-length to accelerate activations in a GRU. We evaluate with multiple GRU models trained on 4 public datasets. Experimental results show achieves top-notch accuracy and improves the secure inference latency by up to 138× over one of the state-of-the-art secure networks on the Penn Treebank dataset.

Hybrid Privacy-Preserving Neural Network (HPPNN) implementing linear layers by Homomorphic Encryption (HE) and nonlinear layers by Garbled Circuit (GC) is one of the most promising secure solutions to emerging Machine Learning as a Service (MLaaS). Unfortunately, a HPPNN suffers from long inference latency, e.g., ∼100 seconds per image, which makes MLaaS unsatisfactory. Because HE-based linear layers of a HPPNN cost 93% inference latency, it is critical to select a set of HE parameters to minimize computational overhead of linear layers. Prior HPPNNs over-pessimistically select huge HE parameters to maintain large noise budgets, since they use the same set of HE parameters for an entire network and ignore the error tolerance capability of a network. In this paper, for fast and accurate secure neural network inference, we propose an automated layer-wise parameter selector, AutoPrivacy, that leverages deep reinforcement learning to automatically determine a set of HE parameters for each linear layer in a HPPNN. The learning-based HE parameter selection policy outperforms conventional rule-based HE parameter selection policy. Compared to prior HPPNNs, AutoPrivacy-optimized HPPNNs reduce inference latency by 53%∼70% with negligible loss of accuracy.

Because of the lack of expertise, to gain benefits from their data, average users have to upload their private data to cloud servers they may not trust. Due to legal or privacy constraints, most users are willing to contribute only their encrypted data, and lack interests or resources to join deep neural network (DNN) training in cloud. To train a DNN on encrypted data in a completely non-interactive way, a recent work proposes a fully homomorphic encryption (FHE)-based technique implementing all activations by \textit{Brakerski-Gentry-Vaikuntanathan} (BGV)-based lookup tables. However, such inefficient lookup-table-based activations significantly prolong private training latency of DNNs. In this paper, we propose, Glyph, an FHE-based technique to fast and accurately train DNNs on encrypted data by switching between TFHE (Fast Fully Homomorphic Encryption over the Torus) and BGV cryptosystems. Glyph uses logic-operation-friendly TFHE to implement nonlinear activations, while adopts vectorial-arithmetic-friendly BGV to perform multiply-accumulations (MACs). Glyph further applies transfer learning on DNN training to improve test accuracy and reduce the number of MACs between ciphertext and ciphertext in convolutional layers. Our experimental results show Glyph obtains state-of-the-art accuracy, and reduces training latency by 69%~99% over prior FHE-based privacy-preserving techniques on encrypted datasets.

Homomorphic Encryption (HE) based secure Neural Networks(NNs) inference is one of the most promising security solutions to emerging Machine Learning as a Service (MLaaS). In the HE-based MLaaS setting, a client encrypts the sensitive data, and uploads the encrypted data to the server that directly processes the encrypted data without decryption, and returns the encrypted result to the client. The clients' data privacy is preserved since only the client has the private key. Existing HE-enabled Neural Networks (HENNs), however, suffer from heavy computational overheads. The state-of-the-art HENNs adopt ciphertext packing techniques to reduce homomorphic multiplications by packing multiple messages into one single ciphertext. Nevertheless, rotations are required in these HENNs to implement the sum of the elements within the same ciphertext. We observed that HENNs have to pay significant computing overhead on rotations, and each of rotations is ∼10× more expensive than homomorphic multiplications between ciphertext and plaintext. So the massive rotations have become a primary obstacle of efficient HENNs. In this paper, we propose a fast, frequency-domain deep neural network called Falcon, for fast inferences on encrypted data. Falcon includes a fast Homomorphic Discrete Fourier Transform (HDFT) using block-circulant matrices to homomorphically support spectral operations. We also propose severalmore »efficient methods to reduce inference latency, including Homomorphic Spectral Convolution and Homomorphic Spectral Fully Connected operations by combing the batched HE and block-circulant matrices. Our experimental results show Falcon achieves the state-of-the-art inference accuracy and reduces the inference latency by 45.45%∼85.34% over prior HENNs on MNIST and CIFAR-10.« less

Nanopore genome sequencing is the key to enabling personalized medicine, global food security, and virus surveillance. The state-of-the-art base-callers adopt deep neural networks (DNNs) to translate electrical signals generated by nanopore sequencers to digital DNA symbols. A DNN-based base-caller consumes 44.5% of total execution time of a nanopore sequencing pipeline. However, it is difficult to quantize a base-caller and build a power-efficient processing-in-memory (PIM) to run the quantized base-caller. Although conventional network quantization techniques reduce the computing overhead of a base-caller by replacing floating-point multiply-accumulations by cheaper fixed-point operations, it significantly increases the number of systematic errors that cannot be corrected by read votes. The power density of prior nonvolatile memory (NVM)-based PIMs has already exceeded memory thermal tolerance even with active heat sinks, because their power efficiency is severely limited by analog-to-digital converters (ADC). Finally, Connectionist Temporal Classification (CTC) decoding and read voting cost 53.7% of total execution time in a quantized base-caller, and thus became its new bottleneck. In this paper, we propose a novel algorithm/architecture co-designed PIM, Helix, to power-efficiently and accurately accelerate nanopore base-calling. From algorithm perspective, we present systematic error aware training to minimize the number of systematic errors in a quantized base-caller. From architecturemore »perspective, we propose a low-power SOT-MRAM-based ADC array to process analog-to-digital conversion operations and improve power efficiency of prior DNN PIMs. Moreover, we revised a traditional NVM-based dot-product engine to accelerate CTC decoding operations, and create a SOT-MRAM binary comparator array to process read voting. Compared to state-of-the-art PIMs, Helix improves base-calling throughput by 6x, throughput per Watt by 11.9x and per mm2 by 7.5x without degrading base-calling accuracy.« less

Although Convolutional Neural Networks (CNNs) have demonstrated the state-of-the-art inference accuracy in various intelligent applications, each CNN inference involves millions of expensive floating point multiply-accumulate (MAC) operations. To energy-efficiently process CNN inferences, prior work proposes an electro-optical accelerator to process power-of-2 quantized CNNs by electro-optical ripple-carry adders and optical binary shifters. The electro-optical accelerator also uses SRAM registers to store intermediate data. However, electro-optical ripple-carry adders and SRAMs seriously limit the operating frequency and inference throughput of the electro-optical accelerator, due to the long critical path of the adder and the long access latency of SRAMs. In this paper, we propose a photonic nonvolatile memory (NVM)-based accelerator, Light-Bulb, to process binarized CNNs by high frequency photonic XNOR gates and popcount units. LightBulb also adopts photonic racetrack memory to serve as input/output registers to achieve high operating frequency. Compared to prior electro-optical accelerators, on average, LightBulb improves the CNN inference throughput by 17× ~ 173× and the inference throughput per Watt by 17.5 × ~ 660×.