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1. Highly scalable maximum likelihood and conjugate Bayesian inference for ERGMs on graph sets with equivalent vertices

   https://doi.org/10.1371/journal.pone.0273039  

   Yin, Fan ; Butts, Carter T. ( August 2022 , PLOS ONE)

   De Vico Fallani, Fabrizio (Ed.)

   The exponential family random graph modeling (ERGM) framework provides a highly flexible approach for the statistical analysis of networks (i.e., graphs). As ERGMs with dyadic dependence involve normalizing factors that are extremely costly to compute, practical strategies for ERGMs inference generally employ a variety of approximations or other workarounds. Markov Chain Monte Carlo maximum likelihood (MCMC MLE) provides a powerful tool to approximate the maximum likelihood estimator (MLE) of ERGM parameters, and is generally feasible for typical models on single networks with as many as a few thousand nodes. MCMC-based algorithms for Bayesian analysis are more expensive, and high-quality answers are challenging to obtain on large graphs. For both strategies, extension to the pooled case—in which we observe multiple networks from a common generative process—adds further computational cost, with both time and memory scaling linearly in the number of graphs. This becomes prohibitive for large networks, or cases in which large numbers of graph observations are available. Here, we exploit some basic properties of the discrete exponential families to develop an approach for ERGM inference in the pooled case that (where applicable) allows an arbitrarily large number of graph observations to be fit at no additional computational cost beyond preprocessing the data itself. Moreover, a variant of our approach can also be used to perform Bayesian inference under conjugate priors, again with no additional computational cost in the estimation phase. The latter can be employed either for single graph observations, or for observations from graph sets. As we show, the conjugate prior is easily specified, and is well-suited to applications such as regularization. Simulation studies show that the pooled method leads to estimates with good frequentist properties, and posterior estimates under the conjugate prior are well-behaved. We demonstrate the usefulness of our approach with applications to pooled analysis of brain functional connectivity networks and to replicated x-ray crystal structures of hen egg-white lysozyme. 

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2. Local Computation Algorithms for Spanners

   Parter, Merav ; Rubinfeld, Ronitt ; Vakilian, Ali ; Yodpinyanee, Anak ( January 2019 , Innovations in Theoretical Computer Science (ITCS))

   A graph spanner is a fundamental graph structure that faithfully preserves the pairwise distances in the input graph up to a small multiplicative stretch. The common objective in the computation of spanners is to achieve the best-known existential size-stretch trade-off efficiently. Classical models and algorithmic analysis of graph spanners essentially assume that the algorithm can read the input graph, construct the desired spanner, and write the answer to the output tape. However, when considering massive graphs containing millions or even billions of nodes not only the input graph, but also the output spanner might be too large for a single processor to store. To tackle this challenge, we initiate the study of local computation algorithms (LCAs) for graph spanners in general graphs, where the algorithm should locally decide whether a given edge (u,v)∈E belongs to the output spanner. Such LCAs give the user the `illusion' that a specific sparse spanner for the graph is maintained, without ever fully computing it. We present the following results: -For general n-vertex graphs and r∈{2,3}, there exists an LCA for (2r−1)-spanners with O˜(n1+1/r) edges and sublinear probe complexity of O˜(n1−1/2r). These size/stretch tradeoffs are best possible (up to polylogarithmic factors). -For every k≥1 and n-vertex graph with maximum degree Δ, there exists an LCA for O(k2) spanners with O˜(n1+1/k) edges, probe complexity of O˜(Δ4n2/3), and random seed of size polylog(n). This improves upon, and extends the work of [Lenzen-Levi, 2018]. We also complement our results by providing a polynomial lower bound on the probe complexity of LCAs for graph spanners that holds even for the simpler task of computing a sparse connected subgraph with o(m) edges. 

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3. Supervised Community Detection with Line Graph Neural Networks

   Chen, Zhengdao ; Li, Lisha ; Bruna, Joan ( May 2019 , International Conference on Learning Representations)

   Community detection in graphs can be solved via spectral methods or posterior inference under certain probabilistic graphical models. Focusing on random graph families such as the stochastic block model, recent research has unified both approaches and identified both statistical and computational detection thresholds in terms of the signal-to-noise ratio. By recasting community detection as a node-wise classification problem on graphs, we can also study it from a learning perspective. We present a novel family of Graph Neural Networks (GNNs) for solving community detection problems in a supervised learning setting. We show that, in a data-driven manner and without access to the underlying generative models, they can match or even surpass the performance of the belief propagation algorithm on binary and multiclass stochastic block models, which is believed to reach the computational threshold in these cases. In particular, we propose to augment GNNs with the non-backtracking operator defined on the line graph of edge adjacencies. The GNNs are achieved good performance on real-world datasets. In addition, we perform the first analysis of the optimization landscape of using (linear) GNNs to solve community detection problems, demonstrating that under certain simplifications and assumptions, the loss value at any local minimum is close to the loss value at the global minimum/minima. 

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4. Supervised Community Detection with Line Graph Neural Networks

   Chen, Zhengdao ; Li, Lisha ; Bruna, Joan ( May 2020 , International conference on learning representations)

   Community detection in graphs can be solved via spectral methods or posterior inference under certain probabilistic graphical models. Focusing on random graph families such as the stochastic block model, recent research has unified both approaches and identified both statistical and computational detection thresholds in terms of the signal-to-noise ratio. By recasting community detection as a node-wise classification problem on graphs, we can also study it from a learning perspective. We present a novel family of Graph Neural Networks (GNNs) for solving community detection problems in a supervised learning setting. We show that, in a data-driven manner and without access to the underlying generative models, they can match or even surpass the performance of the belief propagation algorithm on binary and multiclass stochastic block models, which is believed to reach the computational threshold in these cases. In particular, we propose to augment GNNs with the non-backtracking operator defined on the line graph of edge adjacencies. The GNNs are achieved good performance on real-world datasets. In addition, we perform the first analysis of the optimization landscape of using (linear) GNNs to solve community detection problems, demonstrating that under certain simplifications and assumptions, the loss value at any local minimum is close to the loss value at the global minimum/minima. 

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5. Sharing Social Network Data: Differentially Private Estimation of Exponential Family Random-Graph Models

   https://doi.org/10.1111/rssc.12185  

   Karwa, Vishesh ; Krivitsky, Pavel N. ; Slavković, Aleksandra B. ( October 2016 , Journal of the Royal Statistical Society Series C: Applied Statistics)

   Motivated by a real life problem of sharing social network data that contain sensitive personal information, we propose a novel approach to release and analyse synthetic graphs to protect privacy of individual relationships captured by the social network while maintaining the validity of statistical results. A case-study using a version of the Enron e-mail corpus data set demonstrates the application and usefulness of the proposed techniques in solving the challenging problem of maintaining privacy and supporting open access to network data to ensure reproducibility of existing studies and discovering new scientific insights that can be obtained by analysing such data. We use a simple yet effective randomized response mechanism to generate synthetic networks under ε-edge differential privacy and then use likelihood-based inference for missing data and Markov chain Monte Carlo techniques to fit exponential family random-graph models to the generated synthetic networks.

    

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