skip to main content
Explore Scholarly Publications and Datasets in the NSF-PAR

Title: Network Connectivity Optimization: Fundamental Limits and Effective Algorithms
Network connectivity optimization, which aims to manipulate network connectivity by changing its underlying topology, is a fundamental task behind a wealth of high-impact data mining applications, ranging from immunization, critical infrastructure construction, social collaboration mining, bioinformatics analysis, to intelligent transportation system design. To tackle its exponential computation complexity, greedy algorithms have been extensively used for network connectivity optimization by exploiting its diminishing returns property. Despite the empirical success, two key challenges largely remain open. First, on the theoretic side, the hardness, as well as the approximability of the general network connectivity optimization problem are still nascent except for a few special instances. Second, on the algorithmic side, current algorithms are often hard to balance between the optimization quality and the computational efficiency. In this paper, we systematically address these two challenges for the network connectivity optimization problem. First, we reveal some fundamental limits by proving that, for a wide range of network connectivity optimization problems, (1) they are NP-hard and (2) (1-1/e) is the optimal approximation ratio for any polynomial algorithms. Second, we propose an effective, scalable and general algorithm (CONTAIN) to carefully balance the optimization quality and the computational efficiency.
Authors:
; ; ;
Award ID(s):
1651203 1715385 1947135 2003924
Publication Date:
NSF-PAR ID:
10099217
Journal Name:
KDD '18 Proceedings of the 24th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining
Page Range or eLocation-ID:
1167 to 1176
Sponsoring Org:
National Science Foundation
More Like this
  1. ; ; ; ( , ACM Transactions on Knowledge Discovery from Data)
    The connectivity of networks has been widely studied in many high-impact applications, ranging from immunization, critical infrastructure analysis, social network mining, to bioinformatic system studies. Regardless of the end application domains, connectivity minimization has always been a fundamental task to effectively control the functioning of the underlying system. The combinatorial nature of the connectivity minimization problem imposes an exponential computational complexity to find the optimal solution, which is intractable in large systems. To tackle the computational barrier, greedy algorithm is extensively used to ensure a near-optimal solution by exploiting the diminishing returns property of the problem. Despite the empirical success, the theoretical and algorithmic challenges of the problems still remain wide open. On the theoretical side, the intrinsic hardness and the approximability of the general connectivity minimization problem are still unknown except for a few special cases. On the algorithmic side, existing algorithms are hard to balance between the optimization quality and computational efficiency. In this article, we address the two challenges by (1) proving that the general connectivity minimization problem is NP-hard and is the best approximation ratio for any polynomial algorithms, and (2) proposing the algorithm CONTAIN and its variant CONTAIN + that can well balance optimization effectivenessmore »and computational efficiency for eigen-function based connectivity minimization problems in large networks.« less
  2. ; ; ( , INFORMS Journal on Computing)
    We consider a variant of the vehicle routing problem (VRP) where each customer has a unit demand and the goal is to minimize the total cost of routing a fleet of capacitated vehicles from one or multiple depots to visit all customers. We propose two parallel algorithms to efficiently solve the column-generation-based linear-programming relaxation for this VRP. Specifically, we focus on algorithms for the “pricing problem,” which corresponds to the resource-constrained elementary shortest path problem. The first algorithm extends the pulse algorithm for which we derive a new bounding scheme on the maximum load of any route. The second algorithm is based on random coloring from parameterized complexity which can be also combined with other techniques in the literature for improving VRPs, including cutting planes and column enumeration. We conduct numerical studies using VRP benchmarks (with 50–957 nodes) and instances of a medical home care delivery problem using census data in Wayne County, Michigan. Using parallel computing, both pulse and random coloring can significantly improve column generation for solving the linear programming relaxations and we can obtain heuristic integer solutions with small optimality gaps. Combining random coloring with column enumeration, we can obtain improved integer solutions having less than 2%more »optimality gaps for most VRP benchmark instances and less than 1% optimality gaps for the medical home care delivery instances, both under a 30-minute computational time limit. The use of cutting planes (e.g., robust cuts) can further reduce optimality gaps on some hard instances, without much increase in the run time. Summary of Contribution: The vehicle routing problem (VRP) is a fundamental combinatorial problem, and its variants have been studied extensively in the literature of operations research and computer science. In this paper, we consider general-purpose algorithms for solving VRPs, including the column-generation approach for the linear programming relaxations of the integer programs of VRPs and the column-enumeration approach for seeking improved integer solutions. We revise the pulse algorithm and also propose a random-coloring algorithm that can be used for solving the elementary shortest path problem that formulates the pricing problem in the column-generation approach. We show that the parallel implementation of both algorithms can significantly improve the performance of column generation and the random coloring algorithm can improve the solution time and quality of the VRP integer solutions produced by the column-enumeration approach. We focus on algorithmic design for VRPs and conduct extensive computational tests to demonstrate the performance of various approaches.« less
  3. ; ; ; ( , IEEE Signal Processing in Medicine and Biology Symposium (SPMB))
    Obeid, I. ; Selesnik, I. ; Picone, J. (Ed.)
    The Neuronix high-performance computing cluster allows us to conduct extensive machine learning experiments on big data [1]. This heterogeneous cluster uses innovative scheduling technology, Slurm [2], that manages a network of CPUs and graphics processing units (GPUs). The GPU farm consists of a variety of processors ranging from low-end consumer grade devices such as the Nvidia GTX 970 to higher-end devices such as the GeForce RTX 2080. These GPUs are essential to our research since they allow extremely compute-intensive deep learning tasks to be executed on massive data resources such as the TUH EEG Corpus [2]. We use TensorFlow [3] as the core machine learning library for our deep learning systems, and routinely employ multiple GPUs to accelerate the training process. Reproducible results are essential to machine learning research. Reproducibility in this context means the ability to replicate an existing experiment – performance metrics such as error rates should be identical and floating-point calculations should match closely. Three examples of ways we typically expect an experiment to be replicable are: (1) The same job run on the same processor should produce the same results each time it is run. (2) A job run on a CPU and GPU should producemore »identical results. (3) A job should produce comparable results if the data is presented in a different order. System optimization requires an ability to directly compare error rates for algorithms evaluated under comparable operating conditions. However, it is a difficult task to exactly reproduce the results for large, complex deep learning systems that often require more than a trillion calculations per experiment [5]. This is a fairly well-known issue and one we will explore in this poster. Researchers must be able to replicate results on a specific data set to establish the integrity of an implementation. They can then use that implementation as a baseline for comparison purposes. A lack of reproducibility makes it very difficult to debug algorithms and validate changes to the system. Equally important, since many results in deep learning research are dependent on the order in which the system is exposed to the data, the specific processors used, and even the order in which those processors are accessed, it becomes a challenging problem to compare two algorithms since each system must be individually optimized for a specific data set or processor. This is extremely time-consuming for algorithm research in which a single run often taxes a computing environment to its limits. Well-known techniques such as cross-validation [5,6] can be used to mitigate these effects, but this is also computationally expensive. These issues are further compounded by the fact that most deep learning algorithms are susceptible to the way computational noise propagates through the system. GPUs are particularly notorious for this because, in a clustered environment, it becomes more difficult to control which processors are used at various points in time. Another equally frustrating issue is that upgrades to the deep learning package, such as the transition from TensorFlow v1.9 to v1.13, can also result in large fluctuations in error rates when re-running the same experiment. Since TensorFlow is constantly updating functions to support GPU use, maintaining an historical archive of experimental results that can be used to calibrate algorithm research is quite a challenge. This makes it very difficult to optimize the system or select the best configurations. The overall impact of all of these issues described above is significant as error rates can fluctuate by as much as 25% due to these types of computational issues. Cross-validation is one technique used to mitigate this, but that is expensive since you need to do multiple runs over the data, which further taxes a computing infrastructure already running at max capacity. GPUs are preferred when training a large network since these systems train at least two orders of magnitude faster than CPUs [7]. Large-scale experiments are simply not feasible without using GPUs. However, there is a tradeoff to gain this performance. Since all our GPUs use the NVIDIA CUDA® Deep Neural Network library (cuDNN) [8], a GPU-accelerated library of primitives for deep neural networks, it adds an element of randomness into the experiment. When a GPU is used to train a network in TensorFlow, it automatically searches for a cuDNN implementation. NVIDIA’s cuDNN implementation provides algorithms that increase the performance and help the model train quicker, but they are non-deterministic algorithms [9,10]. Since our networks have many complex layers, there is no easy way to avoid this randomness. Instead of comparing each epoch, we compare the average performance of the experiment because it gives us a hint of how our model is performing per experiment, and if the changes we make are efficient. In this poster, we will discuss a variety of issues related to reproducibility and introduce ways we mitigate these effects. For example, TensorFlow uses a random number generator (RNG) which is not seeded by default. TensorFlow determines the initialization point and how certain functions execute using the RNG. The solution for this is seeding all the necessary components before training the model. This forces TensorFlow to use the same initialization point and sets how certain layers work (e.g., dropout layers). However, seeding all the RNGs will not guarantee a controlled experiment. Other variables can affect the outcome of the experiment such as training using GPUs, allowing multi-threading on CPUs, using certain layers, etc. To mitigate our problems with reproducibility, we first make sure that the data is processed in the same order during training. Therefore, we save the data from the last experiment and to make sure the newer experiment follows the same order. If we allow the data to be shuffled, it can affect the performance due to how the model was exposed to the data. We also specify the float data type to be 32-bit since Python defaults to 64-bit. We try to avoid using 64-bit precision because the numbers produced by a GPU can vary significantly depending on the GPU architecture [11-13]. Controlling precision somewhat reduces differences due to computational noise even though technically it increases the amount of computational noise. We are currently developing more advanced techniques for preserving the efficiency of our training process while also maintaining the ability to reproduce models. In our poster presentation we will demonstrate these issues using some novel visualization tools, present several examples of the extent to which these issues influence research results on electroencephalography (EEG) and digital pathology experiments and introduce new ways to manage such computational issues.« less
  4. ; ; ( , 34th International Symposium on Distributed Computing (DISC))
    We initiate the study of biologically-inspired spiking neural networks from the perspective of streaming algorithms. Like computers, human brains face memory limitations, which pose a significant obstacle when processing large scale and dynamically changing data. In computer science, these challenges are captured by the well-known streaming model, which can be traced back to Munro and Paterson `78 and has had significant impact in theory and beyond. In the classical streaming setting, one must compute a function f of a stream of updates 𝒮 = {u₁,…,u_m}, given restricted single-pass access to the stream. The primary complexity measure is the space used by the algorithm. In contrast to the large body of work on streaming algorithms, relatively little is known about the computational aspects of data processing in spiking neural networks. In this work, we seek to connect these two models, leveraging techniques developed for streaming algorithms to better understand neural computation. Our primary goal is to design networks for various computational tasks using as few auxiliary (non-input or output) neurons as possible. The number of auxiliary neurons can be thought of as the "space" required by the network. Previous algorithmic work in spiking neural networks has many similarities with streaming algorithms.more »However, the connection between these two space-limited models has not been formally addressed. We take the first steps towards understanding this connection. On the upper bound side, we design neural algorithms based on known streaming algorithms for fundamental tasks, including distinct elements, approximate median, and heavy hitters. The number of neurons in our solutions almost match the space bounds of the corresponding streaming algorithms. As a general algorithmic primitive, we show how to implement the important streaming technique of linear sketching efficiently in spiking neural networks. On the lower bound side, we give a generic reduction, showing that any space-efficient spiking neural network can be simulated by a space-efficient streaming algorithm. This reduction lets us translate streaming-space lower bounds into nearly matching neural-space lower bounds, establishing a close connection between the two models.« less
  5. ; ; ; ; ( , IEEE ICDM)
    Network alignment and network completion are two fundamental cornerstones behind many high-impact graph mining applications. The state-of-the-arts have been addressing these tasks in parallel. In this paper, we argue that network alignment and completion are inherently complementary with each other, and hence propose to jointly address them so that the two tasks can benefit from each other. We formulate it from the optimization perspective, and propose an effective algorithm iNEAT to solve it. The proposed method offers two distinctive advantages. First (Alignment accuracy), our method benefits from higher-quality input networks while mitigates the effect of incorrectly inferred links introduced by the completion task itself. Second (Alignment efficiency), thanks to the low-rank structure of the complete networks and alignment matrix, the alignment can be significantly accelerated. The extensive experiments demonstrate the performance of our algorithm.
  • Citation Formats
  • MLA
  • APA
  • Chicago
  • BibTeX
  • Save / Share this Record
  • Send to Email