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1. Deep Learning Movement Intent Decoders Trained with Dataset Aggregation for Prosthetic Limb Control

   https://doi.org/10.1109/TBME.2019.2901882  

   Dantas, Henrique ; Warren, David J. ; Wendelken, Suzanne ; Davis, Tyler ; Clark, Gregory A. ; Mathews, V. John ( July 2019 , IEEE Transactions on Biomedical Engineering)

   Significance: The performance of traditional approaches to decoding movement intent from electromyograms (EMGs) and other biological signals commonly degrade over time. Furthermore, conventional algorithms for training neural network-based decoders may not perform well outside the domain of the state transitions observed during training. The work presented in this paper mitigates both these problems, resulting in an approach that has the potential to substantially he quality of live of people with limb loss. Objective: This paper presents and evaluates the performance of four decoding methods for volitional movement intent from intramuscular EMG signals. Methods: The decoders are trained using dataset aggregation (DAgger) algorithm, in which the training data set is augmented during each training iteration based on the decoded estimates from previous iterations. Four competing decoding methods: polynomial Kalman filters (KFs), multilayer perceptron (MLP) networks, convolution neural networks (CNN), and Long-Short Term Memory (LSTM) networks, were developed. The performance of the four decoding methods was evaluated using EMG data sets recorded from two human volunteers with transradial amputation. Short-term analyses, in which the training and cross-validation data came from the same data set, and long-term analyses training and testing were done in different data sets, were performed. Results: Short-term analyses ofmore »the decoders demonstrated that CNN and MLP decoders performed significantly better than KF and LSTM decoders, showing an improvement of up to 60% in the normalized mean-square decoding error in cross-validation tests. Long-term analysis indicated that the CNN, MLP and LSTM decoders performed significantly better than KF-based decoder at most analyzed cases of temporal separations (0 to 150 days) between the acquisition of the training and testing data sets. Conclusion: The short-term and long-term performance of MLP and CNN-based decoders trained with DAgger, demonstrated their potential to provide more accurate and naturalistic control of prosthetic hands than alternate approaches.« less
2. Deep learning for neural decoding in motor cortex

   https://doi.org/10.1088/1741-2552/ac8fb5  

   Liu, Fangyu ; Meamardoost, Saber ; Gunawan, Rudiyanto ; Komiyama, Takaki ; Mewes, Claudia ; Zhang, Ying ; Hwang, EunJung ; Wang, Linbing ( September 2022 , Journal of Neural Engineering)

   Abstract Objective . Neural decoding is an important tool in neural engineering and neural data analysis. Of various machine learning algorithms adopted for neural decoding, the recently introduced deep learning is promising to excel. Therefore, we sought to apply deep learning to decode movement trajectories from the activity of motor cortical neurons. Approach . In this paper, we assessed the performance of deep learning methods in three different decoding schemes, concurrent, time-delay, and spatiotemporal. In the concurrent decoding scheme where the input to the network is the neural activity coincidental to the movement, deep learning networks including artificial neural network (ANN) and long-short term memory (LSTM) were applied to decode movement and compared with traditional machine learning algorithms. Both ANN and LSTM were further evaluated in the time-delay decoding scheme in which temporal delays are allowed between neural signals and movements. Lastly, in the spatiotemporal decoding scheme, we trained convolutional neural network (CNN) to extract movement information from images representing the spatial arrangement of neurons, their activity, and connectomes (i.e. the relative strengths of connectivity between neurons) and combined CNN and ANN to develop a hybrid spatiotemporal network. To reveal the input features of the CNN in the hybrid networkmore »that deep learning discovered for movement decoding, we performed a sensitivity analysis and identified specific regions in the spatial domain. Main results . Deep learning networks (ANN and LSTM) outperformed traditional machine learning algorithms in the concurrent decoding scheme. The results of ANN and LSTM in the time-delay decoding scheme showed that including neural data from time points preceding movement enabled decoders to perform more robustly when the temporal relationship between the neural activity and movement dynamically changes over time. In the spatiotemporal decoding scheme, the hybrid spatiotemporal network containing the concurrent ANN decoder outperformed single-network concurrent decoders. Significance . Taken together, our study demonstrates that deep learning could become a robust and effective method for the neural decoding of behavior.« less
3. Structured Tuning for Semantic Role Labeling

   Li, Tao ; Jawale, Parth Anand ; Palmer, Martha ; Srikumar, Vivek ( July 2020 , Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics,)

   Recent neural network-driven semantic role labeling (SRL) systems have shown impressive improvements in F1 scores. These improvements are due to expressive input representations, which, at least at the surface, are orthogonal to knowledge-rich constrained decoding mechanisms that helped linear SRL models. Introducing the benefits of structure to inform neural models presents a methodological challenge. In this paper, we present a structured tuning framework to improve mod-els using softened constraints only at training time. Our framework leverages the expressive-ness of neural networks and provides supervision with structured loss components. We start with a strong baseline (RoBERTa) to validate the impact of our approach, and show that our framework outperforms the baseline by learning to comply with declarative constraints. Additionally, our experiments with smaller training sizes show that we can achieve consistent improvements under low-resource scenarios
4. Efficient Kernels for Real-Time Position Decoding from In Vivo Calcium Images

   Zhe Chen, Jim Zhou ( January 2022 , The 2022 IEEE Symposium on Circuits and Systems (ISCAS))

   Recent studies have found that the position of mice or rats can be decoded from calcium imaging of brain activity offline. However, given the complex analysis pipeline, real-time position decoding remains a challenging task, especially considering strict requirements on hardware usage and energy cost for closed-loop feedback applications. In this paper, we propose two neural network based methods and corresponding hardware designs for real-time position decoding from calcium images. Our methods are based on: 1) convolutional neural network (CNN), 2) spiking neural network (SNN) converted from the CNN. We implemented quantized CNN and SNN models on FPGA. Evaluation results show that the CNN and the SNN methods achieve 56.3%/83.1% and 56.0%/82.8% Hit-1/Hit-3 accuracy for the position decoding across different rats, respectively. We also observed an accuracy-latency tradeoff of the SNN method in decoding positions under various time steps. Finally, we present our SNN implementation on the neuromorphic chip Loihi. Index Terms—calcium image, decoding, neural network.
5. Myoelectric control of robotic lower limb prostheses: a review of electromyography interfaces, control paradigms, challenges and future directions

   https://doi.org/10.1088/1741-2552/ac1176  

   Fleming, Aaron ; Stafford, Nicole ; Huang, Stephanie ; Hu, Xiaogang ; Ferris, Daniel P ; Huang, He ( July 2021 , Journal of Neural Engineering)

   Abstract Objective. Advanced robotic lower limb prostheses are mainly controlled autonomously. Although the existing control can assist cyclic movements during locomotion of amputee users, the function of these modern devices is still limited due to the lack of neuromuscular control (i.e. control based on human efferent neural signals from the central nervous system to peripheral muscles for movement production). Neuromuscular control signals can be recorded from muscles, called electromyographic (EMG) or myoelectric signals. In fact, using EMG signals for robotic lower limb prostheses control has been an emerging research topic in the field for the past decade to address novel prosthesis functionality and adaptability to different environments and task contexts. The objective of this paper is to review robotic lower limb Prosthesis control via EMG signals recorded from residual muscles in individuals with lower limb amputations. Approach. We performed a literature review on surgical techniques for enhanced EMG interfaces, EMG sensors, decoding algorithms, and control paradigms for robotic lower limb prostheses. Main results. This review highlights the promise of EMG control for enabling new functionalities in robotic lower limb prostheses, as well as the existing challenges, knowledge gaps, and opportunities on this research topic from human motor control and clinicalmore »practice perspectives. Significance. This review may guide the future collaborations among researchers in neuromechanics, neural engineering, assistive technologies, and amputee clinics in order to build and translate true bionic lower limbs to individuals with lower limb amputations for improved motor function.« less