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1. Classifying Humpback Whale Calls to Song and Non-Song Vocalizations using Bag of Words Descriptor on Acoustic Data

   https://doi.org/10.1109/ICMLA.2019.00150  

   Mohebbi-Kalkhoran, Hamed ; Zhu, Chenyang ; Schinault, Matthew ; Ratilal, Purnima ( December 2019 , 2019 18th IEEE International Conference On Machine Learning And Applications (ICMLA))

   Humpback whale behavior, population distribution and structure can be inferred from long term underwater passive acoustic monitoring of their vocalizations. Here we develop automatic approaches for classifying humpback whale vocalizations into the two categories of song and non-song, employing machine learning techniques. The vocalization behavior of humpback whales was monitored over instantaneous vast areas of the Gulf of Maine using a large aperture coherent hydrophone array system via the passive ocean acoustic waveguide remote sensing technique over multiple diel cycles in Fall 2006. We use wavelet signal denoising and coherent array processing to enhance the signal-to-noise ratio. To build features vector for every time sequence of the beamformed signals, we employ Bag of Words approach to time-frequency features. Finally, we apply Support Vector Machine (SVM), Neural Networks, and Naive Bayes to classify the acoustic data and compare their performances. Best results are obtained using Mel Frequency Cepstrum Coefficient (MFCC) features and SVM which leads to 94% accuracy and 72.73% F1-score for humpback whale song versus non-song vocalization classification, showing effectiveness of the proposed approach for real-time classification at sea. 

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2. Exploring movement patterns and changing distributions of baleen whales in the western North Atlantic using a decade of passive acoustic data

   https://doi.org/10.1111/gcb.15191  

   Davis, Genevieve E. ; Baumgartner, Mark F. ; Corkeron, Peter J. ; Bell, Joel ; Berchok, Catherine ; Bonnell, Julianne M. ; Bort Thornton, Jacqueline ; Brault, Solange ; Buchanan, Gary A. ; Cholewiak, Danielle M. ; et al ( July 2020 , Global Change Biology)

   Six baleen whale species are found in the temperate western North Atlantic Ocean, with limited information existing on the distribution and movement patterns for most. There is mounting evidence of distributional shifts in many species, including marine mammals, likely because of climate‐driven changes in ocean temperature and circulation. Previous acoustic studies examined the occurrence of minke (Balaenoptera acutorostrata) and North Atlantic right whales (NARW;Eubalaena glacialis). This study assesses the acoustic presence of humpback (Megaptera novaeangliae), sei (B. borealis), fin (B. physalus), and blue whales (B. musculus) over a decade, based on daily detections of their vocalizations. Data collected from 2004 to 2014 on 281 bottom‐mounted recorders, totaling 35,033 days, were processed using automated detection software and screened for each species' presence. A published study on NARW acoustics revealed significant changes in occurrence patterns between the periods of 2004–2010 and 2011–2014; therefore, these same time periods were examined here. All four species were present from the Southeast United States to Greenland; humpback whales were also present in the Caribbean. All species occurred throughout all regions in the winter, suggesting that baleen whales are widely distributed during these months. Each of the species showed significant changes in acoustic occurrence after 2010. Similar to NARWs, sei whales had higher acoustic occurrence in mid‐Atlantic regions after 2010. Fin, blue, and sei whales were more frequently detected in the northern latitudes of the study area after 2010. Despite this general northward shift, all four species were detected less on the Scotian Shelf area after 2010, matching documented shifts in prey availability in this region. A decade of acoustic observations have shown important distributional changes over the range of baleen whales, mirroring known climatic shifts and identifying new habitats that will require further protection from anthropogenic threats like fixed fishing gear, shipping, and noise pollution.

    

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3. Bowhead and beluga whale acoustic detections in the western Beaufort Sea 2008–2018

   https://doi.org/10.1371/journal.pone.0253929  

   Stafford, Kathleen M. ; Citta, John J. ; Okkonen, Stephen R. ; Zhang, Jinlun ( June 2021 , PLOS ONE)

   Halliday, William David (Ed.)

   The Distributed Biological Observatory (DBO) was established to detect environmental changes in the Pacific Arctic by regular monitoring of biophysical responses in each of 8 DBO regions. Here we examine the occurrence of bowhead and beluga whale vocalizations in the western Beaufort Sea acquired by acoustic instruments deployed from September 2008-July 2014 and September 2016-October 2018 to examine inter-annual variability of these Arctic endemic species in DBO Region 6. Acoustic data were collected on an oceanographic mooring deployed in the Beaufort shelfbreak jet at ~71.4°N, 152.0°W. Spectrograms of acoustic data files were visually examined for the presence or absence of known signals of bowhead and beluga whales. Weekly averages of whale occurrence were compared with outputs of zooplankton, temperature and sea ice from the BIOMAS model to determine if any of these variables influenced whale occurrence. In addition, the dates of acoustic whale passage in the spring and fall were compared to annual sea ice melt-out and freeze-up dates to examine changes in phenology. Neither bowhead nor beluga whale migration times changed significantly in spring, but bowhead whales migrated significantly later in fall from 2008–2018. There were no clear relationships between bowhead whales and the environmental variables, suggesting that the DBO 6 region is a migratory corridor, but not a feeding hotspot, for this species. Surprisingly, beluga whale acoustic presence was related to zooplankton biomass near the mooring, but this is unlikely to be a direct relationship: there are likely interactions of environmental drivers that result in higher occurrence of both modeled zooplankton and belugas in the DBO 6 region. The environmental triggers that drive the migratory phenology of the two Arctic endemic cetacean species likely extend from Bering Sea transport of heat, nutrients and plankton through the Chukchi and into the Beaufort Sea. 

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4. Rapid 1024-pixel Electrochemical Imaging at 10,000 Frames per Second using Monolithic CMOS Sensor and Multifunctional Data Acquisition System

   https://doi.org/10.1109/JSEN.2018.2835829  

   White, Kevin A. ; Mulberry, Geoffrey ; Kim, Brian N. ( May 2018 , IEEE Sensors Journal)

   Fast electrochemical imaging enables the dynamic study of electroactive molecule diffusion in neurotransmitter release from single cells and dopamine mapping in brain slices. In this paper, we discuss the design of an electrochemical imaging sensor using a monolithic CMOS sensor array and a multifunctional data acquisition system. Using post-CMOS fabrication, the CMOS sensor integrates 1024 on-chip electrodes on the surface and contains 1024 low-noise amplifiers to simultaneous process parallel electrochemical recordings. Each electrochemical electrode and amplifier are optimized to operate at 10.38 kHz sampling rate. To support the operation of the high-throughput CMOS device, a multifunctional data acquisition device is developed to provide the required speed and accuracy. The high analog data rate of 10.63 MHz from all 1024 amplifiers is redundantly sampled by the custom-designed data acquisition system which can process up to 73.6 MHz with up to ~400 Mbytes/s data rate to a computer using USB 3.0 interface. To contain the liquid above the electrochemical sensors and prevent electronic and wire damage, we packaged the monolithic sensor using a 3D-printed well. Using the presented device, 32 pixel × 32 pixel electrochemical imaging of dopamine diffusion is successfully demonstrated at over 10,000 frames per second, the fastest reported to date. 

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5. Characterizing coastal cod vocalization using a towed hydrophone array

   https://doi.org/10.1093/icesjms/fsad104  

   Seri, Sai Geetha ; Schinault, Matthew Edward ; Penna, Seth Michael ; Zhu, Chenyang ; Sivle, Lise Doksæter ; de Jong, Karen ; Handegard, Nils Olav ; Ratilal, Purnima ; Juanes, ed., Francis ( July 2023 , ICES Journal of Marine Science)

   To better understand spawning vocalizations of Norwegian coastal cod (Gadus morhua), a prototype eight-element coherent hydrophone array was deployed in stationary vertical and towed horizontal modes to monitor cod sounds during an experiment in spring 2019. Depth distribution of cod aggregations was monitored concurrently with an ultrasonic echosounder. Cod vocalizations recorded on the hydrophone array are analysed to provide time–frequency characteristics, and source level distribution after correcting for one-way transmission losses from cod locations to the hydrophone array. The recorded cod vocalization frequencies range from ∼20 to 600 Hz with a peak power frequency of ∼60 Hz, average duration of 300 ms, and mean source level of 163.5 ± 7.9 dB re 1 μPa at 1 m. Spatial dependence of received cod vocalization rates is estimated using hydrophone array measurements as the array is towed horizontally from deeper surrounding waters to shallow water inlet areas of the experimental site. The bathymetric-dependent probability of detection regions for cod vocalizations are quantified and are found to be significantly reduced in shallow-water areas of the inlet. We show that the towable hydrophone array deployed from a moving vessel is invaluable because it can survey cod vocalization activity at multiple locations, providing continuous spatial coverage that is complementary to fixed sensor systems that provide continuous temporal coverage at a given location.

    

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