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1. Climate and season are associated with prevalence and distribution of trans-hemispheric blue crab reovirus (Callinectes sapidus reovirus 1)

   https://doi.org/10.3354/meps13405  

   Zhao, M ; Behringer, DC ; Bojko, J ; Kough, AS ; Plough, L ; Tavares, CPS ; Aguilar-Perera, A ; Reynoso, OS ; Seepersad, G ; Maharaj, O ; et al ( August 2020 , Marine Ecology Progress Series)

   Among the many Callinectes spp. across the western Atlantic, the blue crab C. sapidus has the broadest latitudinal distribution, encompassing both tropical and temperate climates. Its life history varies latitudinally, from extended overwintering at high latitudes to year-round activity in tropical locations. Callinectes sapidus reovirus 1 (CsRV1) is a pathogenic virus first described in North Atlantic C. sapidus and has recently been detected in southern Brazil. Little information exists about CsRV1 prevalence at intervening latitudes or in overwintering blue crabs. Using a quantitative reverse transcription PCR (RT-qPCR) method, this study investigated CsRV1 prevalence in C. sapidus across latitudinal differences in temperature and crab life history, as well as in additional Callinectes spp. and within overwintering C. sapidus . CsRV1 prevalence in C. sapidus was significantly correlated with high water temperature and blue crab winter dormancy. Prevalence of CsRV1 in C. sapidus on the mid-Atlantic coast was significantly lower in winter than in summer. CsRV1 infections were not detected in other Callinectes spp. These findings revealed that CsRV1 is present in C. sapidus across their range, but not in other Callinectes species, with prevalence associated with temperature and host life history. Such information helps us to better understand the underlying mechanismsmore »that drive marine virus dynamics under changing environmental conditions.« less
2. Chromosome-level genome assembly of the blue crab, Callinectes sapidus

   https://doi.org/doi.org/10.1093/g3journal/jkab212  

   Bachvaroff, T.R. ( June 2021 , Genes genomes genomics)

   The blue crab, Callinectes sapidus (Rathbun, 1896) is an economically, culturally, and ecologically important species found across the temperate and tropical North and South American Atlantic coast. A reference genome will enable research for this high-value species. Initial assembly combined 200× coverage Illumina paired-end reads, a 60× 8 kb mate-paired library, and 50× PacBio data using the MaSuRCA assembler resulting in a 985 Mb assembly with a scaffold N50 of 153 kb. Dovetail Chicago and HiC sequencing with the 3d DNA assembler and Juicebox assembly tools were then used for chromosome scaffolding. The 50 largest scaffolds span 810 Mb are 1.5–37 Mb long and have a repeat content of 36%. The 190 Mb unplaced sequence is in 3921 sequences over 10 kb with a repeat content of 68%. The final assembly N50 is 18.9 Mb for scaffolds and 9317 bases for contigs. Of arthropod BUSCO, ∼88% (888/1013) were complete and single copies. Using 309 million RNAseq read pairs from 12 different tissues and developmental stages, 25,249 protein-coding genes were predicted. Between C. sapidus and Portunus trituberculatus genomes, 41 of 50 large scaffolds had high nucleotide identity and protein-coding synteny, but 9 scaffolds in both assemblies were not clear matches. The protein-coding genes included 9423 one-to-one putative orthologs, ofmore »which 7165 were syntenic between the two crab species. Overall, the two crab genome assemblies show strong similarities at the nucleotide, protein, and chromosome level and verify the blue crab genome as an excellent reference for this important seafood species.« less
3. Blue crab Callinectes sapidus dietary habits and predation on juvenile winter flounder Pseudopleuronectes americanus in southern New England tidal rivers

   https://doi.org/10.3354/meps13909  

   Taylor, DL ; Fehon, MM ; Cribari, KJ ; Scro, AK ( January 2022 , Marine Ecology Progress Series)

   Blue crabs Callinectes sapidus have expanded their geographic range northward in the NW Atlantic with possible trophodynamic effects on benthic communities. In this study, we examined the blue crab’s diet in 2 southern New England tidal rivers (USA) and expounded on their predator-prey interaction with juvenile winter flounder Pseudopleuronectes americanus . Blue crabs (8-185 mm carapace width [CW]; n = 1835) were collected from the Seekonk River, Rhode Island, and Taunton River, Massachusetts, between May and August 2012 to 2016, and their feeding habits were assessed via stomach content, stable isotope, and molecular genetic analyses. Blue crabs were found to be generalist carnivores-omnivores with diets varying throughout ontogeny, yet shifts in prey composition had no effect on size-based nitrogen isotope signatures and trophic position (3.50 ± 0.35, mean ± SD). Carbon isotope values indicated that detritus-macroalgae were the dominant carbon source to the food web, with additional contributions from terrestrially derived organic matter and phytoplankton in oligohaline and polyhaline waters, respectively. The main prey of blue crabs ≤49 mm CW were amphipods, shrimp, and unidentified crustaceans, and larger conspecifics fed on bivalves, crabs, and fish. Winter flounder remains, e.g. sagittal otoliths, were identified in the diet of 2.5% of field-collectedmore »blue crabs, whereas PCR-based assays detected winter flounder DNA in 17.7% of crab stomachs. Blue crabs 23 to 160 mm CW preyed on winter flounder ranging from 26 to 66 mm total length, with occurrences of predation most closely associated with increases in crab size. Blue crab predation on winter flounder also varied spatially in the rivers, reflecting site-specific differences in flounder densities, abundances of other preferred prey, and dissolved oxygen concentrations that altered predator-prey dynamics. Lastly, the current predatory impact of blue crabs on juvenile winter flounder is nearly equivalent to other portunid crab species. Anticipated temperature-mediated increases in blue crab densities at northern latitudes, however, will intensify the predator-induced mortality of winter flounder and likely hinder their recovery in southern New England.« less
4. Characterization of Two Novel Toti-Like Viruses Co-infecting the Atlantic Blue Crab, Callinectes sapidus, in Its Northern Range of the United States

   https://doi.org/10.3389/fmicb.2022.855750  

   Zhao, Mingli ; Xu, Lan ; Bowers, Holly ; Schott, Eric J. ( March 2022 , Frontiers in Microbiology)

   The advancement of high throughput sequencing has greatly facilitated the exploration of viruses that infect marine hosts. For example, a number of putative virus genomes belonging to the Totiviridae family have been described in crustacean hosts. However, there has been no characterization of the most newly discovered putative viruses beyond description of their genomes. In this study, two novel double-stranded RNA (dsRNA) virus genomes were discovered in the Atlantic blue crab ( Callinectes sapidus ) and further investigated. Sequencing of both virus genomes revealed that they each encode RNA dependent RNA polymerase proteins (RdRps) with similarities to toti-like viruses. The viruses were tentatively named Callinectes sapidus toti-like virus 1 (CsTLV1) and Callinectes sapidus toti-like virus 2 (CsTLV2). Both genomes have typical elements required for −1 ribosomal frameshifting, which may induce the expression of an encoded ORF1–ORF2 (gag-pol) fusion protein. Phylogenetic analyses of CsTLV1 and CsTLV2 RdRp amino acid sequences suggested that they are members of two new genera in the family Totiviridae . The CsTLV1 and CsTLV2 genomes were detected in muscle, gill, and hepatopancreas of blue crabs by real-time reverse transcription quantitative PCR (RT-qPCR). The presence of ~40 nm totivirus-like viral particles in all three tissues was verified by transmissionmore »electron microscopy, and pathology associated with CsTLV1 and CsTLV2 infections were observed by histology. PCR assays showed the prevalence and geographic range of these viruses, to be restricted to the northeast United States sites sampled. The two virus genomes co-occurred in almost all cases, with the CsTLV2 genome being found on its own in 8.5% cases, and the CsTLV1 genome not yet found on its own. To our knowledge, this is the first report of toti-like viruses in C. sapidus . The information reported here provides the knowledge and tools to investigate transmission and potential pathogenicity of these viruses.« less
5. JUVENILE BLUE CRAB (CALLINECTES SAPIDUS) SURVIVAL IN SIMULATED SEAGRASS HABITATS (ZOSTERA MARINA AND RUPPIA MARITIMA)

   Smith, Kylie ( March 2017 , Honor's Thesis: Ecology and Evolutionary Biology, University of Colorado at Boulder)

   Anthropogenic increases in global temperatures and nutrient loads are expected to reduce juvenile blue crab (Callinectes sapidus) survival in the Chesapeake Bay. These factors change habitat composition which can affect juvenile invertebrates and fishes that are dependent on these habitats. Eelgrass (Zostera marina) is declining due to rising water temperatures and increased nutrient loading, while widgeon grass (Ruppia maritima) can tolerate higher temperatures. An indoor mesocosm experiment was designed to test the suitability of Zostera and Ruppia as protective nursery habitats compared to sand. Artificial seagrass plots were placed in flow-through tanks. Juvenile blue crabs were tethered, and adult blue crabs and striped burrfish were introduced as predators in order to estimate juvenile crab survival in different substrates. Survival analysis revealed that Zostera provides more protection for juvenile crabs than sand. There was no significant difference between Ruppia and sand, and between Zostera and Ruppia in providing juvenile protection. This suggests juvenile survival may decrease in the future with Zostera loss and that stricter restrictions on the blue crab fishery in the Chesapeake Bay and mid-Atlantic region would be required to maintain healthy crab populations.