We propose the Write-Once Register (WOR) as an abstraction for building and verifying distributed systems. A WOR exposes a simple, data-centric API: clients can capture, write, and read it. Applications can use a sequence or a set of WORs to obtain properties such as durability, concurrency control, and failure atomicity. By hiding the logic for distributed coordination underneath a data-centric API, the WOR abstraction enables easy, incremental, and extensible implementation and verification of applications built above it. We present the design, implementation, and verification of a system called WormSpace that provides developers with an address space of WORs, implementing each WOR via a Paxos instance. We describe three applications built over WormSpace: a flexible, efficient Multi-Paxos implementation; a shared log implementation with lower append latency than the state-of-the-art; and a fault-tolerant transaction coordinator that uses an optimal number of round-trips. We show that these applications are simple, easy to verify, and match the performance of unverified monolithic implementations. We use a modular layered verification approach to link the proofs for WormSpace, its applications, and a verified operating system to produce the first verified distributed system stack from the application to the operating system.
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Storage Systems are Distributed Systems (So Verify Them That Way!)
To verify distributed systems, prior work introduced a methodology for verifying both the code running on individual machines and the correctness of the overall system when those machines interact via an asynchronous distributed environment. The methodology requires neither domain-specific logic nor tooling. However, distributed systems are only one instance of the more general phenomenon of systems code that interacts with an asynchronous environment. We argue that the software of a storage system can (and should!) be viewed similarly.
We evaluate this approach in VeriSafeKV, a key-value store based on a state-of-the-art B^ε-tree. In building VeriSafeKV, we introduce new techniques to scale automated verification to larger code bases, still without introducing domain-specific logic or tooling. In particular, we show a discipline that keeps the automated verification development cycle responsive. We also combine linear types with dynamic frames to relieve the programmer from most heap-reasoning obligations while enabling them to break out of the linear type system when needed. VeriSafeKV exhibits similar query performance to unverified databases. Its insertion performance is 15× faster than unverified BerkeleyDB and 6× slower than RocksDB.
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- Award ID(s):
- 1700521
- NSF-PAR ID:
- 10286352
- Date Published:
- Journal Name:
- 14th USENIX Symposium on Operating Systems Design and Implementation (OSDI 20)
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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Runtime verification is a lightweight method for monitoring the formal specification of a system during its execution. It has recently been shown that a given state predicate can be monitored consistently by a set of crash-prone asynchronousdistributed monitors observing the system, only if each monitor can emit verdicts taken from alarge enough finite set. We revisit this impossibility result in the concrete context of linear-time logic (ltl ) semantics for runtime verification, that is, when the correctness of the system is specified by anltl formula on its execution traces. First, we show that monitors synthesized based on the 4-valued semantics ofltl (rv-ltl ) may result in inconsistent distributed monitoring, even for some simpleltl formulas. More generally, given anyltl formula φ, we relate the number of different verdicts required by the monitors for consistently monitoring φ, with a specific structural characteristic of φ called itsalternation number . Specifically, we show that, for everyk ≥ 0 , there is anltl formula φ with alternation numberk that cannot be verified at runtime by distributed monitors emitting verdicts from a set of cardinality smaller thank + 1. On the positive side, we define a family of logics, calleddistributed ltl (abbreviated asdltl ), parameterized byk ≥ 0, which refinesrv-ltl by incorporating2k + 4 truth values. Our main contribution is to show that, for everyk ≥ 0, everyltl formula φ with alternation numberk can be consistently monitored by distributed monitors, each running an automaton based on a (2 ⌈k /2 ⌉ +4)-valued logic taken from thedltl family. -
Despite advancements in the areas of parallel and distributed computing, the complexity of programming on High Performance Computing (HPC) resources has deterred many domain experts, especially in the areas of machine learning and artificial intelligence (AI), from utilizing performance benefits of such systems. Researchers and scientists favor high-productivity languages to avoid the inconvenience of programming in low-level languages and costs of acquiring the necessary skills required for programming at this level. In recent years, Python, with the support of linear algebra libraries like NumPy, has gained popularity despite facing limitations which prevent this code from distributed runs. Here we present a solution which maintains both high level programming abstractions as well as parallel and distributed efficiency. Phylanx, is an asynchronous array processing toolkit which transforms Python and NumPy operations into code which can be executed in parallel on HPC resources by mapping Python and NumPy functions and variables into a dependency tree executed by HPX, a general purpose, parallel, task-based runtime system written in C++. Phylanx additionally provides introspection and visualization capabilities for debugging and performance analysis. We have tested the foundations of our approach by comparing our implementation of widely used machine learning algorithms to accepted NumPy standards.more » « less
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Reasoning about memory aliasing and mutation in software verification is a hard problem. This is especially true for systems using SMT-based automated theorem provers. Memory reasoning in SMT verification typically requires a nontrivial amount of manual effort to specify heap invariants, as well as extensive alias reasoning from the SMT solver. In this paper, we present a hybrid approach that combines linear types with SMT-based verification for memory reasoning. We integrate linear types into Dafny, a verification language with an SMT backend, and show that the two approaches complement each other. By separating memory reasoning from verification conditions, linear types reduce the SMT solving time. At the same time, the expressiveness of SMT queries extends the flexibility of the linear type system. In particular, it allows our linear type system to easily and correctly mix linear and nonlinear data in novel ways, encapsulating linear data inside nonlinear data and vice-versa. We formalize the core of our extensions, prove soundness, and provide algorithms for linear type checking. We evaluate our approach by converting the implementation of a verified storage system (about 24K lines of code and proof) written in Dafny, to use our extended Dafny. The resulting system uses linear types for 91% of the code and SMT-based heap reasoning for the remaining 9%. We show that the converted system has 28% fewer lines of proofs and 30% shorter verification time overall. We discuss the development overhead in the original system due to SMT-based heap reasoning and highlight the improved developer experience when using linear types.more » « less
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null (Ed.)The DeepLearningEpilepsyDetectionChallenge: design, implementation, andtestofanewcrowd-sourced AIchallengeecosystem Isabell Kiral*, Subhrajit Roy*, Todd Mummert*, Alan Braz*, Jason Tsay, Jianbin Tang, Umar Asif, Thomas Schaffter, Eren Mehmet, The IBM Epilepsy Consortium◊ , Joseph Picone, Iyad Obeid, Bruno De Assis Marques, Stefan Maetschke, Rania Khalaf†, Michal Rosen-Zvi† , Gustavo Stolovitzky† , Mahtab Mirmomeni† , Stefan Harrer† * These authors contributed equally to this work † Corresponding authors: rkhalaf@us.ibm.com, rosen@il.ibm.com, gustavo@us.ibm.com, mahtabm@au1.ibm.com, sharrer@au.ibm.com ◊ Members of the IBM Epilepsy Consortium are listed in the Acknowledgements section J. Picone and I. Obeid are with Temple University, USA. T. Schaffter is with Sage Bionetworks, USA. E. Mehmet is with the University of Illinois at Urbana-Champaign, USA. All other authors are with IBM Research in USA, Israel and Australia. Introduction This decade has seen an ever-growing number of scientific fields benefitting from the advances in machine learning technology and tooling. More recently, this trend reached the medical domain, with applications reaching from cancer diagnosis [1] to the development of brain-machine-interfaces [2]. While Kaggle has pioneered the crowd-sourcing of machine learning challenges to incentivise data scientists from around the world to advance algorithm and model design, the increasing complexity of problem statements demands of participants to be expert data scientists, deeply knowledgeable in at least one other scientific domain, and competent software engineers with access to large compute resources. People who match this description are few and far between, unfortunately leading to a shrinking pool of possible participants and a loss of experts dedicating their time to solving important problems. Participation is even further restricted in the context of any challenge run on confidential use cases or with sensitive data. Recently, we designed and ran a deep learning challenge to crowd-source the development of an automated labelling system for brain recordings, aiming to advance epilepsy research. A focus of this challenge, run internally in IBM, was the development of a platform that lowers the barrier of entry and therefore mitigates the risk of excluding interested parties from participating. The challenge: enabling wide participation With the goal to run a challenge that mobilises the largest possible pool of participants from IBM (global), we designed a use case around previous work in epileptic seizure prediction [3]. In this “Deep Learning Epilepsy Detection Challenge”, participants were asked to develop an automatic labelling system to reduce the time a clinician would need to diagnose patients with epilepsy. Labelled training and blind validation data for the challenge were generously provided by Temple University Hospital (TUH) [4]. TUH also devised a novel scoring metric for the detection of seizures that was used as basis for algorithm evaluation [5]. In order to provide an experience with a low barrier of entry, we designed a generalisable challenge platform under the following principles: 1. No participant should need to have in-depth knowledge of the specific domain. (i.e. no participant should need to be a neuroscientist or epileptologist.) 2. No participant should need to be an expert data scientist. 3. No participant should need more than basic programming knowledge. (i.e. no participant should need to learn how to process fringe data formats and stream data efficiently.) 4. No participant should need to provide their own computing resources. In addition to the above, our platform should further • guide participants through the entire process from sign-up to model submission, • facilitate collaboration, and • provide instant feedback to the participants through data visualisation and intermediate online leaderboards. The platform The architecture of the platform that was designed and developed is shown in Figure 1. The entire system consists of a number of interacting components. (1) A web portal serves as the entry point to challenge participation, providing challenge information, such as timelines and challenge rules, and scientific background. The portal also facilitated the formation of teams and provided participants with an intermediate leaderboard of submitted results and a final leaderboard at the end of the challenge. (2) IBM Watson Studio [6] is the umbrella term for a number of services offered by IBM. Upon creation of a user account through the web portal, an IBM Watson Studio account was automatically created for each participant that allowed users access to IBM's Data Science Experience (DSX), the analytics engine Watson Machine Learning (WML), and IBM's Cloud Object Storage (COS) [7], all of which will be described in more detail in further sections. (3) The user interface and starter kit were hosted on IBM's Data Science Experience platform (DSX) and formed the main component for designing and testing models during the challenge. DSX allows for real-time collaboration on shared notebooks between team members. A starter kit in the form of a Python notebook, supporting the popular deep learning libraries TensorFLow [8] and PyTorch [9], was provided to all teams to guide them through the challenge process. Upon instantiation, the starter kit loaded necessary python libraries and custom functions for the invisible integration with COS and WML. In dedicated spots in the notebook, participants could write custom pre-processing code, machine learning models, and post-processing algorithms. The starter kit provided instant feedback about participants' custom routines through data visualisations. Using the notebook only, teams were able to run the code on WML, making use of a compute cluster of IBM's resources. The starter kit also enabled submission of the final code to a data storage to which only the challenge team had access. (4) Watson Machine Learning provided access to shared compute resources (GPUs). Code was bundled up automatically in the starter kit and deployed to and run on WML. WML in turn had access to shared storage from which it requested recorded data and to which it stored the participant's code and trained models. (5) IBM's Cloud Object Storage held the data for this challenge. Using the starter kit, participants could investigate their results as well as data samples in order to better design custom algorithms. (6) Utility Functions were loaded into the starter kit at instantiation. This set of functions included code to pre-process data into a more common format, to optimise streaming through the use of the NutsFlow and NutsML libraries [10], and to provide seamless access to the all IBM services used. Not captured in the diagram is the final code evaluation, which was conducted in an automated way as soon as code was submitted though the starter kit, minimising the burden on the challenge organising team. Figure 1: High-level architecture of the challenge platform Measuring success The competitive phase of the "Deep Learning Epilepsy Detection Challenge" ran for 6 months. Twenty-five teams, with a total number of 87 scientists and software engineers from 14 global locations participated. All participants made use of the starter kit we provided and ran algorithms on IBM's infrastructure WML. Seven teams persisted until the end of the challenge and submitted final solutions. The best performing solutions reached seizure detection performances which allow to reduce hundred-fold the time eliptologists need to annotate continuous EEG recordings. Thus, we expect the developed algorithms to aid in the diagnosis of epilepsy by significantly shortening manual labelling time. Detailed results are currently in preparation for publication. Equally important to solving the scientific challenge, however, was to understand whether we managed to encourage participation from non-expert data scientists. Figure 2: Primary occupation as reported by challenge participants Out of the 40 participants for whom we have occupational information, 23 reported Data Science or AI as their main job description, 11 reported being a Software Engineer, and 2 people had expertise in Neuroscience. Figure 2 shows that participants had a variety of specialisations, including some that are in no way related to data science, software engineering, or neuroscience. No participant had deep knowledge and experience in data science, software engineering and neuroscience. Conclusion Given the growing complexity of data science problems and increasing dataset sizes, in order to solve these problems, it is imperative to enable collaboration between people with differences in expertise with a focus on inclusiveness and having a low barrier of entry. We designed, implemented, and tested a challenge platform to address exactly this. Using our platform, we ran a deep-learning challenge for epileptic seizure detection. 87 IBM employees from several business units including but not limited to IBM Research with a variety of skills, including sales and design, participated in this highly technical challenge.more » « less
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