Biogeochemical reactions within intertidal zones of coastal aquifers have been shown to alter the concentrations of terrestrial solutes prior to their discharge to surface waters. In organic‐poor sandy aquifers, the input of marine organic matter from infiltrating seawater supports active biogeochemical reactions within the sediments. However, while the seasonality of surface water organic carbon concentrations (primary production) and groundwater mixing have been documented, there is limited understanding of the transience of various organic carbon pools (pore water particulate, dissolved, sedimentary) within the aquifer and how these relate to the location and magnitudes of biogeochemical reactions over time. To understand the relationship between changes in groundwater flow and the seasonal migration of geochemical patterns, beach pore water and sediment samples were collected and analyzed from six field sampling events spanning 2 years. While the seasonally dynamic patterns of aerobic respiration closely followed those of salinity, redox conditions and nutrient characteristics (distributions of N and P, denitrification rates) were unrelated to contemporaneous salinity patterns. This divergence was attributed to the spatial variations of reactive particulate organic carbon distributions, unrelated to salinity patterns, likely due to filtration, retardation, and immobilization dynamics during transport within the sediments. Results support a “carbon memory” effect within the beach, with the evolution and migration of reaction patterns relating to the distribution of these scattered carbon pools as more mobile solutes move over less mobile pools during changes in hydrologic conditions. This holds important implications for the prediction and quantification of biogeochemical reactions within beach systems.
The Beach Aquifer Microbiome: Research Gaps and Data Needs
Beach aquifers, located in the subsurface of sandy beaches, are unique ecosystems with steep chemical and physical gradients resulting from the mixing of terrestrial fresh groundwater and saline groundwater from the sea. While work has rapidly progressed to understand the physics and chemistry in this environment, much less is known about the microorganisms present despite the fact that they are responsible for vital biogeochemical processes. This paper presents a review of the current state of knowledge of microbes within beach aquifers and the mechanisms that control the beach aquifer microbiome. We review literature describing the distribution and diversity of microorganisms in the freshwater-saltwater mixing zone of beach aquifers, and identify just 12 papers. We highlight knowledge gaps, as well as future research directions: The understanding of beach aquifer microorganisms is informed primarily by 16S ribosomal RNA gene sequences. Metagenomics and metatranscriptomics have not yet been applied but are promising approaches for elucidating key metabolic and ecological roles of microbes in this environment. Additionally, variability in field sampling and analytical methods restrict comparison of data across studies and geographic locations. Further, documented evidence on the migration of microbes within the beach aquifer is limited. Taking into account the physical transport of microbes through sand by flowing groundwater may be critical for understanding the structure and dynamics of microbial communities. Quantitative measurements of rates of elemental cycling in the context of microbial diversity need further investigation, in order to understand the roles of microbes in mediating biogeochemical fluxes from the beach aquifer to the coastal ocean. Lastly, understanding the current state of beach aquifers in regulating carbon stocks is critical to foster a better understanding of the contribution of the beach aquifer microbiome to global climate models.
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- Award ID(s):
- 2024504
- NSF-PAR ID:
- 10298271
- Date Published:
- Journal Name:
- Frontiers in Environmental Science
- Volume:
- 9
- ISSN:
- 2296-665X
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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Abstract -
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ABSTRACT Successful rearing of fish in hatcheries is critical for conservation, recreational fishing, commercial fishing through wild stock enhancements, and aquaculture production. Flowthrough (FT) hatcheries require more water than recirculating aquaculture systems (RAS), which enable up to 99% of their water to be recycled, thus significantly reducing environmental impacts. Here, we evaluated the biological and physical microbiome interactions of three Atlantic salmon hatcheries (RAS n = 2, FT n = 1). Gill, skin, and digesta from six juvenile fish along with tank biofilms and water were sampled from tanks in each of the hatcheries (60 fish across 10 tanks) to assess the built environment and mucosal microbiota using 16S rRNA gene sequencing. The water and tank biofilm had more microbial richness than fish mucus, while skin and digesta from RAS fish had 2 times the richness of FT fish. Body sites each had unique microbiomes ( P < 0.001) and were influenced by hatchery system type ( P < 0.001), with RAS being more similar. A strong association between the tank and fish microbiome was observed. Water and tank biofilm richness was positively correlated with skin and digesta richness. Strikingly, the gill, skin, and digesta communities were more similar to that in the origin tank biofilm than those in all other experimental tanks, suggesting that the tank biofilm has a direct influence on fish-associated microbial communities. Lastly, microbial diversity and mucous cell density were positively associated with fish growth and length. The results from this study provide evidence for a link between the tank microbiome and the fish microbiome, with the skin microbiome as an important intermediate. IMPORTANCE Atlantic salmon, Salmo salar , is the most farmed marine fish worldwide, with an annual production of 2,248 million metric tons in 2016. Salmon hatcheries are increasingly changing from flowthrough toward recirculating aquaculture system (RAS) design to accommodate more control over production along with improved environmental sustainability due to lower impacts on water consumption. To date, microbiome studies of hatcheries have focused either on the fish mucosal microbiota or on the built environment microbiota but have not combined the two to understand their interactions. Our study evaluates how the water and tank biofilm microbiota influences the fish microbiota across three mucosal environments (gill, skin, and digesta). Results from this study highlight how the built environment is a unique source of microbes to colonize fish mucus and, furthermore, how this can influence fish health. Further studies can use this knowledge to engineer built environments to modulate fish microbiota for beneficial phenotypes.more » « less
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- Free Publicly Accessible Full Text
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Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.3389/fenvs.2021.653568
