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1. Oxic methane production from methylphosphonate in a large oligotrophic lake: limitation by substrate and organic carbon supply

   https://doi.org/10.1128/aem.01097-23  

   Peoples, Logan M.; Dore, John E.; Bilbrey, Evan M.; Vick-Majors, Trista J.; Ranieri, John R.; Evans, Kate A.; Ross, Abigail M.; Devlin, Shawn P.; Church, Matthew J. (December 2023, Applied and Environmental Microbiology)

   Glass, Jennifer B. (Ed.)

   ABSTRACT While methane is typically produced under anoxic conditions, methane supersaturation in the presence of oxygen has been observed in both marine and fresh waters. The biological cleavage of methylphosphonate (MPn), which releases both phosphate and methane, is one pathway that may contribute to this paradox. Here, we explore the genomic and functional potential for oxic methane production (OMP) via MPn in Flathead Lake, a large oligotrophic freshwater lake in northwest Montana. Time series and depth profile measurements show that epilimnetic methane was persistently supersaturated despite high oxygen levels, suggesting a possiblein situoxic source. Metagenomic sequencing indicated that 10% of microorganisms in the lake, many of which are related to the Burkholderiales (Betaproteobacteria) and Actinomycetota, have the genomic capacity to cleave MPn. We experimentally demonstrated that these organisms produce methane stoichiometrically with MPn consumption across multiple years. However, methane was only produced at appreciable rates in the presence of MPn when a labile organic carbon source was added, suggesting that this process may be limited by both MPn and labile carbon supply. Members of the generaAcidovorax,Rhodoferax, andAllorhizobium, organisms which make up less than 1% of Flathead Lake communities, consistently responded to MPn addition. We demonstrate that the genomic and physiological potential for MPn use exists among diverse, resident members of Flathead Lake and could contribute to OMP in freshwater lakes when substrates are available. IMPORTANCEMethane is an important greenhouse gas that is typically produced under anoxic conditions. We show that methane is supersaturated in a large oligotrophic lake despite the presence of oxygen. Metagenomic sequencing indicates that diverse, widespread microorganisms may contribute to the oxic production of methane through the cleavage of methylphosphonate. We experimentally demonstrate that these organisms, especially members of the genusAcidovorax, can produce methane through this process. However, appreciable rates of methane production only occurred when both methylphosphonate and labile sources of carbon were added, indicating that this process may be limited to specific niches and may not be completely responsible for methane concentrations in Flathead Lake. This work adds to our understanding of methane dynamics by describing the organisms and the rates at which they can produce methane through an oxic pathway in a representative oligotrophic lake. 

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2. Methane emissions from proglacial lakes: A synthesis study directed toward Lake Agassiz

   https://doi.org/10.1016/j.quascirev.2024.108975  

   Brosius, Laura S; Walter_Anthony, Katey M; Lowell, Thomas V; Anthony, Peter; Chanton, Jeffery P; Jones, Miriam C; Grosse, Guido; Breckenridge, Andy J (November 2024, Quaternary Science Reviews)

   QSR (Ed.)

   Large proglacial lakes could have been a significant methane source during the last deglaciation. Today, proglacial lakes are small and mostly limited in the northern hemisphere to the margins of ice sheets in Greenland, Alaska, and Canada, but much larger proglacial lakes collectively flooded millions of square kilometers in the northern hemisphere over the last deglacial period. We synthesize new and existing methane flux measurements from modern proglacial lakes in Alaska and Greenland and use these data together with reconstructed lake area and bathymetry, new paleorecords of sediment organic geochemistry, carbon accumulation, and other proxies to broadly constrain the possible deglacial methane dynamics of a single large North American proglacial lake, Lake Agassiz. While large influxes of glaciogenic material contributed to rapid organic carbon burial during initial lakes phases, limited bioavailability of this carbon is suggested by its likely subglacial origin and prior microbial processing. Water depths of >20 m across 37–90% of the lake area facilitating significant oxidation of methane within the water column further limited emissions. Later phases of lake lowering and subsequent re-expansion into shallow aquatic and subaerial environments provided the most significant opportunity for methane production according to our estimates. We found that Lake Agassiz was likely a small source [0.4–2.7 Tg yr−1 mean (0.1–9.9 Tg yr−1 95% CI)] of methane during the last deglaciation on par with emissions from modern wildfires. Although poor constraints of past global proglacial lake areas and morphologies currently prevent extrapolation of our results, we suggest that these systems were likely an additional source of methane during the last deglacial transition that require further study. 

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3. Panarctic lakes exerted a small positive feedback on early Holocene warming due to deglacial release of methane

   https://doi.org/10.1038/s43247-023-00930-2  

   Brosius, L. S.; Walter Anthony, K. M.; Treat, C. C.; Jones, M. C.; Dyonisius, M.; Grosse, G. (December 2023, Communications Earth & Environment)

   Abstract Climate-driven permafrost thaw can release ancient carbon to the atmosphere, begetting further warming in a positive feedback loop. Polar ice core data and young radiocarbon ages of dissolved methane in thermokarst lakes have challenged the importance of this feedback, but field studies did not adequately account for older methane released from permafrost through bubbling. We synthesized panarctic isotope and emissions datasets to derive integrated ages of panarctic lake methane fluxes. Methane age in modern thermokarst lakes (3132 ± 731 years before present) reflects remobilization of ancient carbon. Thermokarst-lake methane emissions fit within the constraints imposed by polar ice core data. Younger, albeit ultimately larger sources of methane from glacial lakes, estimated here, lagged those from thermokarst lakes. Our results imply that panarctic lake methane release was a small positive feedback to climate warming, comprising up to 17% of total northern hemisphere sources during the deglacial period. 

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4. Current and Future Global Lake Methane Emissions: A Process‐Based Modeling Analysis

   https://doi.org/10.1029/2022JG007137  

   Zhuang, Qianlai; Guo, Mingyang; Melack, John M.; Lan, Xin; Tan, Zeli; Oh, Youmi; Leung, L. Ruby (March 2023, Journal of Geophysical Research: Biogeosciences)

   Abstract Freshwater ecosystem contributions to the global methane budget remains the most uncertain among natural sources. With warming and accompanying carbon release from thawed permafrost and thermokarst lake expansion, the increase of methane emissions could be large. However, the impact and relative importance of various factors related to warming remain uncertain. Based on diverse lake characteristics incorporated in modeling and observational data, we calibrate and verify a lake biogeochemistry model. The model is then applied to estimate global lake methane emissions and examine the impacts of temperature increase for the first and the last decades of the 21st century under different climate scenarios. We find that current emissions are 24.0 ± 8.4 Tg CH₄ yr⁻¹from lakes larger than 0.1 km², accounting for 11% of the global total natural source as estimated based on atmospheric inversion. Future projections under the RCP8.5 scenario suggest a 58%–86% growth in emissions from lakes. Our model sensitivity analysis indicates that additional carbon substrates from thawing permafrost may enhance methane production under warming in the Arctic. Warming enhanced methane oxidation in lake water can be an effective sink to reduce the net release from global lakes. 

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5. Linking Biogeochemical and Hydrodynamic Processes to Model Methane Fluxes in Shallow, Tropical Floodplain Lakes

   https://doi.org/10.1029/2022MS003385  

   Guo, Mingyang; Melack, John M; Zhou, Wencai; Barbosa, Pedro M; Amaral, Joao_H F; Zhuang, Qianlai (December 2023, Journal of Advances in Modeling Earth Systems)

   Abstract Floodplains lakes are abundant in the Amazon basin and are important methane sources to the atmosphere. Existing biogeochemical models require modifications and inclusion of hydrodynamic processes operative in shallow, warm waters to be applied to these aquatic ecosystems. We modified a 1‐dimensional process‐based, lake biogeochemical model and combined a 3‐dimensional hydrodynamic model to suit Amazon floodplains. We evaluated the combined model's performance simulating methane concentrations and fluxes and several related processes in the open lake and an embayment of a well‐studied Amazon lake. Parameters for calibration were selected through sensitivity tests using a machine learning‐based algorithm, classification, and regression trees. Comparison between simulated and measured fluxes indicate generally good agreement in seasonal patterns and magnitudes. Comparisons of near‐surface concentrations varied with no clear patterns. Simulations of methane concentrations at near‐surface and near‐bottom, and diffusive emissions are most sensitive to carbon mineralization rate, Q₁₀factors for methanogenesis and oxidation, and methane oxidation potential. Modeled rates of planktonic photosynthesis were generally lower than measurements, though simulated planktonic respiration was often similar to measurements. Simulated rates of methane oxidation were considerably lower, with a few exceptions, than measurements of methane oxidation in oxic water of the lake. Improvements of results of the linked hydrodynamic‐biogeochemical model will result from inclusion of advective transport, use of parameter values appropriate for tropical waters, especially for methane oxidation and photosynthesis, and addition of changes in hydrostatic pressure to model of ebullition. 

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