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1. Using Mobility Data to Understand and Forecast COVID19 Dynamics

   Wang, L; Ben, X; Adiga, A; Tendulkar, A; Venkatramanan, S; Vullikanti, A; Aggarwal, G; Talekar, A; Chen, J; Lewis, B; et al (December 2020, medRxiv)

   null (Ed.)

   Disease dynamics, human mobility, and public policies co-evolve during a pandemic such as COVID-19. Understanding dynamic human mobility changes and spatial interaction patterns are crucial for understanding and forecasting COVID- 19 dynamics. We introduce a novel graph-based neural network(GNN) to incorporate global aggregated mobility flows for a better understanding of the impact of human mobility on COVID-19 dynamics as well as better forecasting of disease dynamics. We propose a recurrent message passing graph neural network that embeds spatio-temporal disease dynamics and human mobility dynamics for daily state-level new confirmed cases forecasting. This work represents one of the early papers on the use of GNNs to forecast COVID-19 incidence dynamics and our methods are competitive to existing methods. We show that the spatial and temporal dynamic mobility graph leveraged by the graph neural network enables better long-term forecasting performance compared to baselines. 

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2. Predictability of human mobility during the COVID-19 pandemic in the United States

   https://doi.org/10.1093/pnasnexus/pgae308  

   Hajlasz, Michal; Pei, Sen; Seguin-Fowler, ed., Rebecca (July 2024, PNAS Nexus)

   Abstract Human mobility is fundamental to a range of applications including epidemic control, urban planning, and traffic engineering. While laws governing individual movement trajectories and population flows across locations have been extensively studied, the predictability of population-level mobility during the COVID-19 pandemic driven by specific activities such as work, shopping, and recreation remains elusive. Here we analyze mobility data for six place categories at the US county level from 2020 February 15 to 2021 November 23 and measure how the predictability of these mobility metrics changed during the COVID-19 pandemic. We quantify the time-varying predictability in each place category using an information-theoretic metric, permutation entropy. We find disparate predictability patterns across place categories over the course of the pandemic, suggesting differential behavioral changes in human activities perturbed by disease outbreaks. Notably, predictability change in foot traffic to residential locations is mostly in the opposite direction to other mobility categories. Specifically, visits to residences had the highest predictability during stay-at-home orders in March 2020, while visits to other location types had low predictability during this period. This pattern flipped after the lifting of restrictions during summer 2020. We identify four key factors, including weather conditions, population size, COVID-19 case growth, and government policies, and estimate their nonlinear effects on mobility predictability. Our findings provide insights on how people change their behaviors during public health emergencies and may inform improved interventions in future epidemics. 

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3. Spatial scales of COVID-19 transmission in Mexico

   https://doi.org/10.1093/pnasnexus/pgae306  

   Klein, Brennan; Hartle, Harrison; Shrestha, Munik; Zenteno, Ana_Cecilia; Barros_Sierra_Cordera, David; Nicolás-Carlock, José_R; Bento, Ana_I; Althouse, Benjamin_M; Gutierrez, Bernardo; Escalera-Zamudio, Marina; et al (July 2024, PNAS Nexus)

   Abstract During outbreaks of emerging infectious diseases, internationally connected cities often experience large and early outbreaks, while rural regions follow after some delay. This hierarchical structure of disease spread is influenced primarily by the multiscale structure of human mobility. However, during the COVID-19 epidemic, public health responses typically did not take into consideration the explicit spatial structure of human mobility when designing nonpharmaceutical interventions (NPIs). NPIs were applied primarily at national or regional scales. Here, we use weekly anonymized and aggregated human mobility data and spatially highly resolved data on COVID-19 cases at the municipality level in Mexico to investigate how behavioral changes in response to the pandemic have altered the spatial scales of transmission and interventions during its first wave (March–June 2020). We find that the epidemic dynamics in Mexico were initially driven by exports of COVID-19 cases from Mexico State and Mexico City, where early outbreaks occurred. The mobility network shifted after the implementation of interventions in late March 2020, and the mobility network communities became more disjointed while epidemics in these communities became increasingly synchronized. Our results provide dynamic insights into how to use network science and epidemiological modeling to inform the spatial scale at which interventions are most impactful in mitigating the spread of COVID-19 and infectious diseases in general. 

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4. The forecast of COVID-19 spread risk at the county level

   https://doi.org/10.1186/s40537-021-00491-1  

   Hssayeni, Murtadha D.; Chala, Arjuna; Dev, Roger; Xu, Lili; Shaw, Jesse; Furht, Borko; Ghoraani, Behnaz (December 2021, Journal of Big Data)

   Abstract The early detection of the coronavirus disease 2019 (COVID-19) outbreak is important to save people’s lives and restart the economy quickly and safely. People’s social behavior, reflected in their mobility data, plays a major role in spreading the disease. Therefore, we used the daily mobility data aggregated at the county level beside COVID-19 statistics and demographic information for short-term forecasting of COVID-19 outbreaks in the United States. The daily data are fed to a deep learning model based on Long Short-Term Memory (LSTM) to predict the accumulated number of COVID-19 cases in the next two weeks. A significant average correlation was achieved ( r =0.83 ( p = 0.005 )) between the model predicted and actual accumulated cases in the interval from August 1, 2020 until January 22, 2021. The model predictions had r > 0.7 for 87% of the counties across the United States. A lower correlation was reported for the counties with total cases of <1000 during the test interval. The average mean absolute error (MAE) was 605.4 and decreased with a decrease in the total number of cases during the testing interval. The model was able to capture the effect of government responses on COVID-19 cases. Also, it was able to capture the effect of age demographics on the COVID-19 spread. It showed that the average daily cases decreased with a decrease in the retiree percentage and increased with an increase in the young percentage. Lessons learned from this study not only can help with managing the COVID-19 pandemic but also can help with early and effective management of possible future pandemics. The code used for this study was made publicly available on https://github.com/Murtadha44/covid-19-spread-risk. 

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5. Spatiotemporal Patterns of Human Mobility and Its Association with Land Use Types during COVID-19 in New York City

   https://doi.org/10.3390/ijgi10050344  

   Jiang, Yuqin; Huang, Xiao; Li, Zhenlong (May 2021, ISPRS International Journal of Geo-Information)

   The novel coronavirus disease (COVID-19) pandemic has impacted every facet of society. One of the non-pharmacological measures to contain the COVID-19 infection is social distancing. Federal, state, and local governments have placed multiple executive orders for human mobility reduction to slow down the spread of COVID-19. This paper uses geotagged tweets data to reveal the spatiotemporal human mobility patterns during this COVID-19 pandemic in New York City. With New York City open data, human mobility pattern changes were detected by different categories of land use, including residential, parks, transportation facilities, and workplaces. This study further compares human mobility patterns by land use types based on an open social media platform (Twitter) and the human mobility patterns revealed by Google Community Mobility Report cell phone location, indicating that in some applications, open-access social media data can generate similar results to private data. The results of this study can be further used for human mobility analysis and the battle against COVID-19. 

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