More Like this

1. Limitations of the Q 10 Coefficient for Quantifying Temperature Sensitivity of Anaerobic Organic Matter Decomposition: A Modeling Based Assessment

   https://doi.org/10.1029/2021JG006264  

   Wu, Qiong ; Ye, Rongzhong ; Bridgham, Scott D. ; Jin, Qusheng ( August 2021 , Journal of Geophysical Research: Biogeosciences)

   TheQ₁₀coefficient is the ratio of reaction rates at two temperatures 10°C apart, and has been widely applied to quantify the temperature sensitivity of organic matter decomposition. However, biogeochemists and ecologists have long recognized that a constantQ₁₀coefficient does not describe the temperature sensitivity of organic matter decomposition accurately. To examine the consequences of the constantQ₁₀assumption, we built a biogeochemical reaction model to simulate anaerobic organic matter decomposition in peatlands in the Upper Peninsula of Michigan, USA, and compared the simulation results to the predictions withQ₁₀coefficients. By accounting for the reactions of extracellular enzymes, mesophilic fermenting and methanogenic microbes, and their temperature responses, the biogeochemical reaction model reproduces the observations of previous laboratory incubation experiments, including the temporal variations in the concentrations of dissolved organic carbon, acetate, dihydrogen, carbon dioxide, and methane, and confirms that fermentation limits the progress of anaerobic organic matter decomposition. The modeling results illustrate the oversimplification inherent in the constantQ₁₀assumption and how the assumption undermines the kinetic prediction of anaerobic organic matter decomposition. In particular, the model predicts that between 5°C and 30°C, the decomposition rate increases almost linearly with increasing temperature, which stands in sharp contrast to the exponential relationship given by theQ₁₀coefficient. As a result, the constantQ₁₀approach tends to underestimate the rates of organic matter decomposition within the temperature ranges whereQ₁₀values are determined, and overestimate the rates outside the temperature ranges. The results also show how biogeochemical reaction modeling, combined with laboratory experiments, can help uncover the temperature sensitivity of organic matter decomposition arising from underlying catalytic mechanisms.

    

   more » « less
2. Thermal adaptation of soil microbial growth traits in response to chronic warming

   https://doi.org/10.1128/aem.00825-23  

   Eng, Ashley Y. ; Narayanan, Achala ; Alster, Charlotte J. ; DeAngelis, Kristen M. ( November 2023 , Applied and Environmental Microbiology)

   Spear, John R. (Ed.)

   Adaptation of soil microbes due to warming from climate change has been observed, but it remains unknown what microbial growth traits are adaptive to warming. We studied bacterial isolates from the Harvard Forest Long-Term Ecological Research site, where field soils have been experimentally heated to 5°C above ambient temperature with unheated controls for 30 years. We hypothesized that Alphaproteobacteria from warmed plots have (i) less temperature-sensitive growth rates; (ii) higher optimum growth temperatures; and (iii) higher maximum growth temperatures compared to isolates from control plots. We made high-throughput measurements of bacterial growth in liquid cultures over time and across temperatures from 22°C to 37°C in 2–3°C increments. We estimated growth rates by fitting Gompertz models to the growth data. Temperature sensitivity of growth rate, optimum growth temperature, and maximum growth temperature were estimated by the Ratkowsky 1983 model and a modified Macromolecular Rate Theory (MMRT) model. To determine evidence of adaptation, we ran phylogenetic generalized least squares tests on isolates from warmed and control soils. Our results showed evidence of adaptation of higher optimum growth temperature of bacterial isolates from heated soils. However, we observed no evidence of adaptation of temperature sensitivity of growth and maximum growth temperature. Our project begins to capture the shape of the temperature response curves, but illustrates that the relationship between growth and temperature is complex and cannot be limited to a single point in the biokinetic range.

   Soils are the largest terrestrial carbon sink and the foundation of our food, fiber, and fuel systems. Healthy soils are carbon sinks, storing more carbon than they release. This reduces the amount of carbon dioxide released into the atmosphere and buffers against climate change. Soil microbes drive biogeochemical cycling and contribute to soil health through organic matter breakdown, plant growth promotion, and nutrient distribution. In this study, we determined how soil microbial growth traits respond to long-term soil warming. We found that bacterial isolates from warmed plots showed evidence of adaptation of optimum growth temperature. This suggests that increased microbial biomass and growth in a warming world could result in greater carbon storage. As temperatures increase, greater microbial activity may help reduce the soil carbon feedback loop. Our results provide insight on how atmospheric carbon cycling and soil health may respond in a warming world.

    

   more » « less
3. Soil incubation methods lead to large differences in inferred methane production temperature sensitivity

   https://doi.org/10.1088/1748-9326/ad3565  

   Li, Zhen ; Grant, Robert F. ; Chang, Kuang-Yu ; Hodgkins, Suzanne B. ; Tang, Jinyun ; Cory, Alexandra ; Mekonnen, Zelalem A. ; Saleska, Scott R. ; Brodie, Eoin L. ; Varner, Ruth K. ; et al ( April 2024 , Environmental Research Letters)

   Quantifying the temperature sensitivity of methane (CH₄) production is crucial for predicting how wetland ecosystems will respond to climate warming. Typically, the temperature sensitivity (often quantified as a Q₁₀value) is derived from laboratory incubation studies and then used in biogeochemical models. However, studies report wide variation in incubation-inferred Q₁₀values, with a large portion of this variation remaining unexplained. Here we applied observations in a thawing permafrost peatland (Stordalen Mire) and a well-tested process-rich model (ecosys) to interpret incubation observations and investigate controls on inferred CH₄production temperature sensitivity. We developed a field-storage-incubation modeling approach to mimic the full incubation sequence, including field sampling at a particular time in the growing season, refrigerated storage, and laboratory incubation, followed by model evaluation. We found that CH₄production rates during incubation are regulated by substrate availability and active microbial biomass of key microbial functional groups, which are affected by soil storage duration and temperature. Seasonal variation in substrate availability and active microbial biomass of key microbial functional groups led to strong time-of-sampling impacts on CH₄production. CH₄production is higher with less perturbation post-sampling, i.e. shorter storage duration and lower storage temperature. We found a wide range of inferred Q₁₀values (1.2–3.5), which we attribute to incubation temperatures, incubation duration, storage duration, and sampling time. We also show that Q₁₀values of CH₄production are controlled by interacting biological, biochemical, and physical processes, which cause the inferred Q₁₀values to differ substantially from those of the component processes. Terrestrial ecosystem models that use a constant Q₁₀value to represent temperature responses may therefore predict biased soil carbon cycling under future climate scenarios.

    

   more » « less
4. Microbial community coalescence and nitrogen cycling in simulated mortality decomposition hotspots

   https://doi.org/10.1186/s13717-023-00451-y  

   Keenan, Sarah W. ; Emmons, Alexandra L. ; DeBruyn, Jennifer M. ( September 2023 , Ecological Processes)

   The pulsed introduction of dead plant and animal material into soils represents one of the primary mechanisms for returning organic carbon (C) and nitrogen (N) compounds to biogeochemical cycles. Decomposition of animal carcasses provides a high C and N resource that stimulates indigenous environmental microbial communities and introduces non-indigenous, carcass-derived microbes to the environment. However, the dynamics of the coalesced microbial communities, and the relative contributions of environment- and carcass-derived microbes to C and N cycling are unknown. To test whether environment-derived, carcass-derived, or the combined microbial communities exhibited a greater influence on C and N cycling, we conducted controlled laboratory experiments that combined carcass decomposition fluids and soils to simulate carcass decomposition hotspots. We selectively sterilized the decomposition fluid and/or soil to remove microbial communities and create different combinations of environment- and carcass-derived communities and incubated the treatments under three temperatures (10, 20, and 30 °C).

   Carcass-derived bacteria persisted in soils in our simulated decomposition scenarios, albeit at low abundances. Mixed communities had higher respiration rates at 10 and 30 °C compared to soil or carcass communities alone. Interestingly, at higher temperatures, mixed communities had reduced diversity, but higher respiration, suggesting functional redundancy. Mixed communities treatments also provided evidence that carcass-associated microbes may be contributing to ammonification and denitrification, but that nitrification is still primarily carried out by native soil organisms.

   Our work yields insight into the dynamics of microbial communities that are coalescing during carcass decomposition, and how they contribute to recycling carcasses in terrestrial ecosystems.

    

   more » « less
5. Increased {DOC} concentrations and earlier stream flow generation in response to warming in a high elevation mountain watershed in Colorado

   Kerins, Devon ; Zhi, Wei ; Sullivan, Pamela ; Williams, Kenneth ; Brown, Wendy ; Dong, Wenming ; Carroll, Rosemary ; Kirchner, James ; Li, Li ( December 2021 , American Geophysical Union annual meeting)

   High elevation mountain watersheds are undergoing rapid warming and declining snow fractions worldwide, causing earlier and quicker snowmelt. Understanding how this hydrologic shift affects subsurface flow paths, biogeochemical reactions, and solute export has been challenging due to the entanglement of hydrological and biogeochemical processes. Coal Creek, a high-elevation catchment (2,700 3,700 m, 53 km2) in Colorado, is experiencing a higher rate of warming than surrounding low-lying areas. This warming corresponds with dynamic and increased responses from biogenic solutes and dissolved organic carbon (DOC), whereas the behavior of geogenic solutes and dissolved inorganic carbon (DIC) has remained relatively unchanged. DOC has experienced the largest concentration increase (>3x), with annual average flow weighted concentrations positively correlated to average annual temperature. This suggests temperature is the main driver of increasing DOC levels. Although DOC and DIC response to warming is influenced by many drivers, the relative contribution of each remains unknown. DOC and DIC were analyzed to incorporate both carbon component products of soil respiration (DOC and CO2) and to represent high solute concentrations transported by shallow (DOC) versus deep (DIC) subsurface flow. The contrasting behavior of these carbon solutes indicates climate change and warming are driving changes in organic matter decomposition and soil respiration. Modeling results from the process-based model HBV-BioRT show increased temperatures cause earlier snowmelt and streamflow generation and lower peak discharge. As stream flow generation occurs earlier, so do DOC flushing and DIC dilution events. Additionally, post-snowmelt periods show greater DOC production and concentrations under warming scenarios. Results indicated increased production of DOC in post-snowmelt periods. DOC is then flushed out by earlier snowmelt partitioned through the shallow soil zone. Most process-based studies lack a watershed-scale understanding of carbon transformation and flow path alterations. This work demonstrates complex hydrologic and biogeochemical coupling at the watershed scale to illustrate how water flow paths and chemistry are responding to a changing climate in highelevation mountain watersheds. 

   more » « less