skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Explore Research Products in the PAR
It may take a few hours for recently added research products to appear in PAR search results.


Title: Genome‐Enabled Parameterization Enhances Model Simulation of CH 4 Cycling in Four Natural Wetlands
Abstract Microbial processes are crucial in producing and oxidizing biological methane (CH4) in natural wetlands. Therefore, modeling methanogenesis and methanotrophy is advantageous for accurately projecting CH4cycling. Utilizing the CLM‐Microbe model, which explicitly represents the growth and death of methanogens and methanotrophs, we demonstrate that genome‐enabled model parameterization improves model performance in four natural wetlands. Compared to the default model parameterization against CH4flux, genomic‐enabled model parameterization added another contain on microbial biomass, notably enhancing the precision of simulated CH4flux. Specifically, the coefficient of determination (R2) increased from 0.45 to 0.74 for Sanjiang Plain, from 0.78 to 0.89 for Changbai Mountain, and from 0.35 to 0.54 for Sallie's Fen, respectively. A drop inR2was observed for the Dajiuhu nature wetland, primarily caused by scatter data points. Theil's coefficient (U) and model efficiency (ME) confirmed the model performance from default parameterization to genome‐enabled model parameterization. Compared with the model solely calibrated to surface CH4flux, additional constraints of functional gene data led to better CH4seasonality; meanwhile, genome‐enabled model parameterization established more robust associations between simulated CH4production rates and environmental factors. Sensitivity analysis underscored the pivotal role of microbial physiology in governing CH4flux. This genome‐enabled model parameterization offers a valuable promise to integrate fast‐cumulating genomic data with CH4models to better understand microbial roles in CH4in the era of climate change.  more » « less
Award ID(s):
2208656 2145130
PAR ID:
10552600
Author(s) / Creator(s):
; ; ; ; ; ; ; ; ; ; ; ;
Publisher / Repository:
American Geophysical Union
Date Published:
Journal Name:
Journal of Advances in Modeling Earth Systems
Volume:
16
Issue:
10
ISSN:
1942-2466
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. ; ; ; ; ; ; ; ; ; ; et al (, Journal of Geophysical Research: Biogeosciences)
    Abstract Tidal wetlands provide valuable ecosystem services, including storing large amounts of carbon. However, the net exchanges of carbon dioxide (CO2) and methane (CH4) in tidal wetlands are highly uncertain. While several biogeochemical models can operate in tidal wetlands, they have yet to be parameterized and validated against high‐frequency, ecosystem‐scale CO2and CH4flux measurements across diverse sites. We paired the Cohort Marsh Equilibrium Model (CMEM) with a version of the PEPRMT model called PEPRMT‐Tidal, which considers the effects of water table height, sulfate, and nitrate availability on CO2and CH4emissions. Using a model‐data fusion approach, we parameterized the model with three sites and validated it with two independent sites, with representation from the three marine coasts of North America. Gross primary productivity (GPP) and ecosystem respiration (Reco) modules explained, on average, 73% of the variation in CO2exchange with low model error (normalized root mean square error (nRMSE) <1). The CH4module also explained the majority of variance in CH4emissions in validation sites (R2 = 0.54; nRMSE = 1.15). The PEPRMT‐Tidal‐CMEM model coupling is a key advance toward constraining estimates of greenhouse gas emissions across diverse North American tidal wetlands. Further analyses of model error and case studies during changing salinity conditions guide future modeling efforts regarding four main processes: (a) the influence of salinity and nitrate on GPP, (b) the influence of laterally transported dissolved inorganic C on Reco, (c) heterogeneous sulfate availability and methylotrophic methanogenesis impacts on surface CH4emissions, and (d) CH4responses to non‐periodic changes in salinity. 
    more » « less
  2. ; ; ; (, Journal of Geophysical Research: Biogeosciences)
    Abstract While a stimulating effect of plant primary productivity on soil carbon dioxide (CO2) emissions has been well documented, links between gross primary productivity (GPP) and wetland methane (CH4) emissions are less well investigated. Determination of the influence of primary productivity on wetland CH4emissions (FCH4) is complicated by confounding influences of water table level and temperature on CH4production, which also vary seasonally. Here, we evaluate the link between preceding GPP and subsequent FCH4at two fens in Wisconsin using eddy covariance flux towers, Lost Creek (US‐Los) and Allequash Creek (US‐ALQ). Both wetlands are mosaics of forested and shrub wetlands, with US‐Los being larger in scale and having a more open canopy. Co‐located sites with multi‐year observations of flux, hydrology, and meteorology provide an opportunity to measure and compare lag effects on FCH4without interference due to differing climate. Daily average FCH4from US‐Los reached a maximum of 47.7 ηmol CH4m−2 s−1during the study period, while US‐ALQ was more than double at 117.9 ηmol CH4 m−2 s−1. The lagged influence of GPP on temperature‐normalized FCH4(Tair‐FCH4) was weaker and more delayed in a year with anomalously high precipitation than a following drier year at both sites. FCH4at US‐ALQ was lower coincident with higher stream discharge in the wet year (2019), potentially due to soil gas flushing during high precipitation events and lower water temperatures. Better understanding of the lagged influence of GPP on FCH4due to this study has implications for climate modeling and more accurate carbon budgeting. 
    more » « less
  3. ; ; ; ; ; ; ; ; ; ; et al (, Global Biogeochemical Cycles)
    Abstract Large stocks of soil carbon (C) and nitrogen (N) in northern permafrost soils are vulnerable to remobilization under climate change. However, there are large uncertainties in present‐day greenhouse gas (GHG) budgets. We compare bottom‐up (data‐driven upscaling and process‐based models) and top‐down (atmospheric inversion models) budgets of carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2O) as well as lateral fluxes of C and N across the region over 2000–2020. Bottom‐up approaches estimate higher land‐to‐atmosphere fluxes for all GHGs. Both bottom‐up and top‐down approaches show a sink of CO2in natural ecosystems (bottom‐up: −29 (−709, 455), top‐down: −587 (−862, −312) Tg CO2‐C yr−1) and sources of CH4(bottom‐up: 38 (22, 53), top‐down: 15 (11, 18) Tg CH4‐C yr−1) and N2O (bottom‐up: 0.7 (0.1, 1.3), top‐down: 0.09 (−0.19, 0.37) Tg N2O‐N yr−1). The combined global warming potential of all three gases (GWP‐100) cannot be distinguished from neutral. Over shorter timescales (GWP‐20), the region is a net GHG source because CH4dominates the total forcing. The net CO2sink in Boreal forests and wetlands is largely offset by fires and inland water CO2emissions as well as CH4emissions from wetlands and inland waters, with a smaller contribution from N2O emissions. Priorities for future research include the representation of inland waters in process‐based models and the compilation of process‐model ensembles for CH4and N2O. Discrepancies between bottom‐up and top‐down methods call for analyses of how prior flux ensembles impact inversion budgets, more and well‐distributed in situ GHG measurements and improved resolution in upscaling techniques. 
    more » « less
  4. ; ; ; ; ; ; ; ; ; ; et al (, Global Biogeochemical Cycles)
    Abstract Methane (CH4) is a potent greenhouse gas with a warming potential 84 times that of carbon dioxide (CO2) over a 20‐year period. Atmospheric CH4concentrations have been rising since the nineteenth century but the cause of large increases post‐2007 is disputed. Tropical wetlands are thought to account for ∼20% of global CH4emissions, but African tropical wetlands are understudied and their contribution is uncertain. In this work, we use the first airborne measurements of CH4sampled over three wetland areas in Zambia to derive emission fluxes. Three independent approaches to flux quantification from airborne measurements were used: Airborne mass balance, airborne eddy‐covariance, and an atmospheric inversion. Measured emissions (ranging from 5 to 28 mg m−2 hr−1) were found to be an order of magnitude greater than those simulated by land surface models (ranging from 0.6 to 3.9 mg m−2hr−1), suggesting much greater emissions from tropical wetlands than currently accounted for. The prevalence of such underestimated CH4sources may necessitate additional reductions in anthropogenic greenhouse gas emissions to keep global warming below a threshold of 2°C above preindustrial levels. 
    more » « less
  5. ; ; ; ; ; ; ; ; ; ; et al (, mSystems)
    Hernandez, Marcela (Ed.)
    ABSTRACT While wetlands are major sources of biogenic methane (CH4), our understanding of resident microbial metabolism is incomplete, which compromises the prediction of CH4emissions under ongoing climate change. Here, we employed genome-resolved multi-omics to expand our understanding of methanogenesis in the thawing permafrost peatland of Stordalen Mire in Arctic Sweden. In quadrupling the genomic representation of the site’s methanogens and examining their encoded metabolism, we revealed that nearly 20% of the metagenome-assembled genomes (MAGs) encoded the potential for methylotrophic methanogenesis. Further, 27% of the transcriptionally active methanogens expressed methylotrophic genes; forMethanosarcinalesandMethanobacterialesMAGs, these data indicated the use of methylated oxygen compounds (e.g., methanol), while forMethanomassiliicoccales, they primarily implicated methyl sulfides and methylamines. In addition to methanogenic methylotrophy, >1,700 bacterial MAGs across 19 phyla encoded anaerobic methylotrophic potential, with expression across 12 phyla. Metabolomic analyses revealed the presence of diverse methylated compounds in the Mire, including some known methylotrophic substrates. Active methylotrophy was observed across all stages of a permafrost thaw gradient in Stordalen, with the most frozen non-methanogenic palsa found to host bacterial methylotrophy and the partially thawed bog and fully thawed fen seen to house both methanogenic and bacterial methylotrophic activities. Methanogenesis across increasing permafrost thaw is thus revised from the sole dominance of hydrogenotrophic production and the appearance of acetoclastic at full thaw to consider the co-occurrence of methylotrophy throughout. Collectively, these findings indicate that methanogenic and bacterial methylotrophy may be an important and previously underappreciated component of carbon cycling and emissions in these rapidly changing wetland habitats. IMPORTANCEWetlands are the biggest natural source of atmospheric methane (CH4) emissions, yet we have an incomplete understanding of the suite of microbial metabolism that results in CH4formation. Specifically, methanogenesis from methylated compounds is excluded from all ecosystem models used to predict wetland contributions to the global CH4budget. Though recent studies have shown methylotrophic methanogenesis to be active across wetlands, the broad climatic importance of the metabolism remains critically understudied. Further, some methylotrophic bacteria are known to produce methanogenic by-products like acetate, increasing the complexity of the microbial methylotrophic metabolic network. Prior studies of Stordalen Mire have suggested that methylotrophic methanogenesis is irrelevantin situand have not emphasized the bacterial capacity for metabolism, both of which we countered in this study. The importance of our findings lies in the significant advancement toward unraveling the broader impact of methylotrophs in wetland methanogenesis and, consequently, their contribution to the terrestrial global carbon cycle. 
    more » « less
  • Citation Formats
  • MLA
  • APA
  • Chicago
  • BibTeX
  • Save / Share this Record
  • Send to Email