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  1. Objective: Brain areas implicated in semantic memory can be damaged in patients with epilepsy (PWE). However, it is challenging to delineate semantic processing deficits from acoustic, linguistic, and other verbal aspects in current neuropsychological assessments. We developed a new Visual-based Semantic Association Task (ViSAT) to evaluate nonverbal semantic processing in PWE. Method: The ViSAT was adapted from similar predecessors (Pyramids & Palm Trees test, PPT; Camels & Cactus Test, CCT) comprised of 100 unique trials using real-life color pictures that avoid demographic, cultural, and other potential confounds. We obtained performance data from 23 PWE participants and 24 control participants (Control), along with crowdsourced normative data from 54 Amazon Mechanical Turk (Mturk) workers. Results: ViSAT reached a consensus >90% in 91.3% of trials compared to 83.6% in PPT and 82.9% in CCT. A deep learning model demonstrated that visual features of the stimulus images (color, shape; i.e., non-semantic) did not influence top answer choices (p = 0.577). The PWE group had lower accuracy than the Control group (p = 0.019). PWE had longer response times than the Control group in general and this was augmented for the semantic processing (trial answer) stage (both p < 0.001). Conclusions: This study demonstrated performance impairments in PWE that may reflect dysfunction of nonverbal semantic memory circuits, such as seizure onset zones overlapping with key semantic regions (e.g., anterior temporal lobe). The ViSAT paradigm avoids confounds, is repeatable/longitudinal, captures behavioral data, and is open-source, thus we propose it as a strong alternative for clinical and research assessment of nonverbal semantic memory. 
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    Free, publicly-accessible full text available April 15, 2025
  2. Despite considerable progress in tropical cyclone (TC) research, our current understanding and prediction capabilities regarding the TC intensity–size relation remain limited. This study systematically analyzes the key characteristics and performance of different types of mathematical models for TC intensity–size relations using the 6-hourly Tropical Cyclone Extended Best Track Dataset spanning 1988 to 2020. The models investigated include statistical, idealized (e.g., Rankine vortex), parametric, and theoretical models. In addition to directly comparing the solutions obtained from individual models to the observed TC records, we assess the models that can produce a unique finite-sized radial profile of surface winds for each TC record—a minimal requirement to ensure that the predicted radial profile of the surface winds would align with the observed profile. The results reveal that a sufficient condition to guarantee a unique radial profile of surface winds is that the associated model can be written as a radial invariant quantity, although it does not guarantee a finite-sized profile. Only the effective absolute angular momentum (eAAM) model, among all the models examined in this study, meets the minimum requirement. Furthermore, the solutions obtained from the eAAM model are well correlated with their observational counterparts (85 to 95%) with little systematic bias and small absolute mean errors that are very close to the observational resolution. The eAAM model’s ability to capture the complex intensity–size relation of observed TCs, in combination with these desirable features, suggests its high potential for gaining a better understanding of the underlying physics governing the observed TC intensity–size relation.

     
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    Free, publicly-accessible full text available January 1, 2025
  3. Archibald, John (Ed.)
    The interaction between the nuclear and chloroplast genomes in plants is crucial for preserving essential cellular functions in the face of varying rates of mutation, levels of selection, and modes of transmission. Despite this, identifying nuclear genes that coevolve with chloroplast genomes at a genome-wide level has remained a challenge. In this study, we conducted an evolutionary rate covariation analysis to identify candidate nuclear genes coevolving with chloroplast genomes in Juglandaceae. Our analysis was based on 4,894 orthologous nuclear genes and 76 genes across seven chloroplast partitions in nine Juglandaceae species. Our results indicated that 1,369 (27.97%) of the nuclear genes demonstrated signatures of coevolution, with the Ycf1/2 partition yielding the largest number of hits (765) and the ClpP1 partition yielding the fewest (13). These hits were found to be significantly enriched in biological processes related to leaf development, photoperiodism, and response to abiotic stress. Among the seven partitions, AccD, ClpP1, MatK, and RNA polymerase partitions and their respective hits exhibited a narrow range, characterized by dN/dS values below 1. In contrast, the Ribosomal, Photosynthesis, Ycf1/2 partitions and their corresponding hits, displayed a broader range of dN/dS values, with certain values exceeding 1. Our findings highlight the differences in the number of candidate nuclear genes coevolving with the seven chloroplast partitions in Juglandaceae species and the correlation between the evolution rates of these genes and their corresponding chloroplast partitions. 
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  4. Carbon nanotube (CNT)/epoxy nanocomposites have a great potential of possessing many advanced properties. However, the homogenization of CNT dispersion is still a great challenge in the research field of nanocomposites. This study applied a novel dispersion agent, carboxymethyl cellulose (CMC), to functionalize CNTs and improve CNT dispersion in epoxy. The effectiveness of the CMC functionalization was compared with mechanical mixing and a commonly used surfactant, sodium dodecylbenzene sulfonate (NaDDBS), regarding dispersion, mechanical and corrosion properties of CNT/epoxy nanocomposites with three different CNT concentrations (0.1%, 0.3% and 0.5%). The experimental results of Raman spectroscopy, particle size analysis and transmission electron microscopy showed that CMC functionalized CNTs reduced CNT cluster sizes more efficiently than NaDDBS functionalized and mechanically mixed CNTs, indicating a better CNT dispersion. The peak particle size of CMC functionalized CNTs reduced as much as 54% (0.1% CNT concentration) and 16% (0.3% CNT concentration), compared to mechanical mixed and NaDDBS functionalized CNTs. Because of the better dispersion, it was found by compressive tests that CNT/epoxy nanocomposites with CMC functionalization resulted in 189% and 66% higher compressive strength, 224% and 50% higher modulus of elasticity than those with mechanical mixing and NaDDBS functionalization respectively (0.1% CNT cencentration). In addition, electrochemical corrosion tests also showed that CNT/epoxy nanocomposites with CMC functionalization achieved lowest corrosion rate (0.214 mpy), the highest corrosion resistance (201.031 Ω·cm2), and the lowest porosity density (0.011%). 
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  5. Abstract

    Chinese hamster ovary (CHO) cells are among the most common cell lines used for therapeutic protein production. Membrane fouling during bioreactor harvesting is a major limitation for the downstream purification of therapeutic proteins. Host cell proteins (HCP) are the most challenging impurities during downstream purification processes. The present work focuses on identification of HCP foulants during CHO bioreactor harvesting using reverse asymmetrical commercial membrane BioOptimal™ MF‐SL. In order to investigate foulants and fouling behavior during cell clarification, for the first time a novel backwash process was developed to effectively elute almost all the HCP and DNA from the fouled membrane filter. The isoelectric points (pIs) and molecular weights (MWs) of major HCP in the bioreactor harvest and fouled on the membrane were successfully characterized using two‐dimensional gel electrophoresis (2D SDS‐PAGE). In addition, a total of 8 HCP were identified using matrix‐assisted laser desorption/ionization‐mass spectroscopy (MALDI‐MS). The majority of these HCP are enzymes or associated with exosomes, both of which can form submicron‐sized particles which could lead to the plugging of the filters.

     
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  6. null (Ed.)
  7. Abstract

    Alternating tangential flow filtration (ATF) has become one of the primary methods for cell retention and clarification in perfusion bioreactors. However, membrane fouling can cause product sieving losses that limit the performance of these systems. This study used scanning electron microscopy and energy dispersive X‐ray spectroscopy to identify the nature and location of foulants on 0.2 μm polyethersulfone hollow fiber membranes after use in industrial Chinese hamster ovary cell perfusion bioreactors for monoclonal antibody production. Membrane fouling was dominated by proteinaceous material, primarily host cell proteins along with some monoclonal antibody. Fouling occurred primarily on the lumen surface with much less protein trapped within the depth of the fiber. Protein deposition was also most pronounced near the inlet/exit of the hollow fibers, which are the regions with the greatest flux (and transmembrane pressure) during the cyclical operation of the ATF. These results provide important insights into the underlying phenomena governing the fouling behavior of ATF systems for continuous bioprocessing.

     
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  8. Abstract

    The central theme of this study is to explore if and how the intensity of a tropical cyclone (TC) is related to its size. This subject has puzzled atmospheric scientists since the work of Deppermann, but the existence of this relationship still remains elusive. The improved understanding of the intensity–size relationship of TCs will help coastal communities to prepare for the maximum potential damage as both the intensity and size have important impacts on wind damages, storm surges, and flooding. This study considers 33 years (1988–2020) of TC records of maximum surface winds and radii of maximum and gale-force winds over the North Atlantic basin derived from the Extended Best Track Dataset. Analysis of these TC records reveals a robust positive correlation between loss of Earth and relative angular momentum. This finding together with the inspiration from the seminal work of Emanuel and his collaborators leads us to combine absolute angular momentum and its frictional loss as a radially invariant quantity, referred to as “effective absolute angular momentum” (eAAM), for radial profiles of TC surface winds. It is demonstrated that the eAAM model can reproduce the observed complex intensity–size relationship of TCs, which can be further reduced to a quasi-linear one after factoring out the angular momentum loss and the radius of maximum surface winds. The findings of this study would not only advance our understanding of the complex TC intensity–size relation, but also allow for operational assessments of TC severity and potential damage just using its outer wind information.

     
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  9. Abstract

    A plant can be thought of as a colony comprising numerous growth buds, each developing to its own rhythm. Such lack of synchrony impedes efforts to describe core principles of plant morphogenesis, dissect the underlying mechanisms, and identify regulators. Here, we use the minimalist known angiosperm to overcome this challenge and provide a model system for plant morphogenesis. We present a detailed morphological description of the monocot Wolffia australiana, as well as high-quality genome information. Further, we developed the plant-on-chip culture system and demonstrate the application of advanced technologies such as single-nucleus RNA-sequencing, protein structure prediction, and gene editing. We provide proof-of-concept examples that illustrate how W. australiana can decipher the core regulatory mechanisms of plant morphogenesis.

     
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