skip to main content


Title: High Resolution Viewscape Modeling Evaluated Through Immersive Virtual Environments
Visual characteristics of urban environments influence human perception and behavior, including choices for living, recreation and modes of transportation. Although geospatial visualizations hold great potential to better inform urban planning and design, computational methods are lacking to realistically measure and model urban and parkland viewscapes at sufficiently fine-scale resolution. In this study, we develop and evaluate an integrative approach to measuring and modeling fine-scale viewscape characteristics of a mixed-use urban environment, a city park. Our viewscape approach improves the integration of geospatial and perception elicitation techniques by combining high-resolution lidar-based digital surface models, visual obstruction, and photorealistic immersive virtual environments (IVEs). We assessed the realism of our viewscape models by comparing metrics of viewscape composition and configuration to human subject evaluations of IVEs across multiple landscape settings. We found strongly significant correlations between viewscape metrics and participants’ perceptions of viewscape openness and naturalness, and moderately strong correlations with landscape complexity. These results suggest that lidar-enhanced viewscape models can adequately represent visual characteristics of fine-scale urban environments. Findings also indicate the existence of relationships between human perception and landscape pattern. Our approach allows urban planners and designers to model and virtually evaluate high-resolution viewscapes of urban parks and natural landscapes with fine-scale details never before demonstrated.  more » « less
Award ID(s):
1737563
NSF-PAR ID:
10203617
Author(s) / Creator(s):
; ; ; ; ;
Date Published:
Journal Name:
ISPRS International Journal of Geo-Information
Volume:
9
Issue:
7
ISSN:
2220-9964
Page Range / eLocation ID:
445
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Abstract

    Current land‐use classifications used to assess urbanization effects on stream water quality date back to the 1980s when limited information was available to characterize watershed attributes that mediate non‐point source pollution. With high resolution remote sensing and widely used GIS tools, there has been a vast increase in the availability and precision of geospatial data of built environments. In this study, we leverage geospatial data to expand the characterization of developed landscapes and create a typology that allows us to better understand the impact of complex developed landscapes across the rural to urban gradient. We assess the ability of the developed landscape typology to reveal patterns in stream water chemistry previously undetected by traditional land‐cover based classification. We examine the distribution of land‐cover, infrastructure, topography and geology across 3876 National Hydrography Dataset Plus catchments in the Piedmont region of North Carolina, USA. From this dataset, we generate metrics to evaluate the abundance, density and position of landscape features relative to streams, catchment outlets and topographic wetness metrics. While impervious surfaces are a key distinguishing feature of the urban landscape, sanitary infrastructure, population density and geology are better predictors of baseflow stream water chemistry. Unsupervised clustering was used to generate a distinct developed landscape typology based on the expanded, high‐resolution landscape feature information. Using stream chemistry data from 37 developed headwater catchments, we compared the baseflow water chemistry grouped by traditional land‐cover based classes of urbanization (rural, low, medium and high density) to our composition and structure‐based classification (a nine‐class typology). The typology based on 22 metrics of developed landscape composition and structure explained over 50% of the variation in NO3‐N, TDN, DOC, Cl, and Brconcentration, while the ISC‐based classification only significantly explained 23% of the variation in TDN. These results demonstrate the importance of infrastructure, population and geology in defining developed landscapes and improving discrete classes for water management.

     
    more » « less
  2. A robust multi-functional framework for widespread planning of nature-based solutions (NBS) must incorporate components of social equity and hydro-environmental performance in a cost-effective manner. NBS systems address stormwater mitigation by increasing on-site infiltration and evaporation through enhanced greenspace while also improving various components of societal well-being, such as physical health (e.g., heart disease, diabetes), mental health (e.g., post-traumatic stress disorder, depression), and social cohesion. However, current optimization tools for NBS systems rely on stormwater quantity abatement and, to a lesser extent, economic costs and environmental pollutant mitigation. Therefore, the objective of this study is to explore how NBS planning may be improved to maximize hydrological, environmental, and social co-benefits in an unequivocal and equitable manner. Here, a novel equity-based indexing framework is proposed to better understand how we might optimize social and physical functionalities of NBS systems as a function of transdisciplinary characteristics. Specifically, this study explores the spatial tradeoffs associated with NBS allocation by first optimizing a local watershed-scale model according to traditional metrics of stormwater efficacy (e.g., cost efficiency, hydrological runoff reduction, and pollutant load reduction) using SWMM modeling. The statistical dispersion of social health is then identified using the Area Deprivation Index (ADI), which is a high-resolution spatial account of socioeconomic disadvantages that have been linked to adverse health outcomes, according to United States census properties. As NBSs have been shown to mitigate various adverse health conditions through increased urban greening, this improved understanding of geospatial health characteristics may be leveraged to inform an explicit representation of social wellness within NBS planning frameworks. This study presents and demonstrates a novel framework for integrating hydro-environmental modeling, economic efficiency, and social health deprivation using a dimensionless Gini coefficient, which is intended to spur the positive connection of social and physical influences within robust NBS planning. Hydro-environmental risk (according to hydro-dynamic modeling) and social disparity (according to ADI distribution) are combined within a common measurement unit to capture variation across spatial domains and to optimize fair distribution across the study area. A comparison between traditional SWMM-based optimization and the proposed Gini-based framework reveals how the spatial allocation of NBSs within the watershed may be structured to address significantly more areas of social health deprivation while achieving similar hydro-environmental performance and cost-efficiency. The results of a case study for NBS planning in the White Oak Bayou watershed in Houston, Texas, USA revealed runoff volume reductions of 3.45% and 3.38%, pollutant load reductions of 11.15% and 11.28%, and ADI mitigation metrics of 16.84% and 35.32% for the SWMM-based and the Gini-based approaches, respectively, according to similar cost expenditures. As such, the proposed framework enables an analytical approach for balancing the spatial tradeoffs of overlapping human-water goals in NBS planning while maintaining hydro-environmental robustness and economic efficiency. 
    more » « less
  3. INTRODUCTION Transposable elements (TEs), repeat expansions, and repeat-mediated structural rearrangements play key roles in chromosome structure and species evolution, contribute to human genetic variation, and substantially influence human health through copy number variants, structural variants, insertions, deletions, and alterations to gene transcription and splicing. Despite their formative role in genome stability, repetitive regions have been relegated to gaps and collapsed regions in human genome reference GRCh38 owing to the technological limitations during its development. The lack of linear sequence in these regions, particularly in centromeres, resulted in the inability to fully explore the repeat content of the human genome in the context of both local and regional chromosomal environments. RATIONALE Long-read sequencing supported the complete, telomere-to-telomere (T2T) assembly of the pseudo-haploid human cell line CHM13. This resource affords a genome-scale assessment of all human repetitive sequences, including TEs and previously unknown repeats and satellites, both within and outside of gaps and collapsed regions. Additionally, a complete genome enables the opportunity to explore the epigenetic and transcriptional profiles of these elements that are fundamental to our understanding of chromosome structure, function, and evolution. Comparative analyses reveal modes of repeat divergence, evolution, and expansion or contraction with locus-level resolution. RESULTS We implemented a comprehensive repeat annotation workflow using previously known human repeats and de novo repeat modeling followed by manual curation, including assessing overlaps with gene annotations, segmental duplications, tandem repeats, and annotated repeats. Using this method, we developed an updated catalog of human repetitive sequences and refined previous repeat annotations. We discovered 43 previously unknown repeats and repeat variants and characterized 19 complex, composite repetitive structures, which often carry genes, across T2T-CHM13. Using precision nuclear run-on sequencing (PRO-seq) and CpG methylated sites generated from Oxford Nanopore Technologies long-read sequencing data, we assessed RNA polymerase engagement across retroelements genome-wide, revealing correlations between nascent transcription, sequence divergence, CpG density, and methylation. These analyses were extended to evaluate RNA polymerase occupancy for all repeats, including high-density satellite repeats that reside in previously inaccessible centromeric regions of all human chromosomes. Moreover, using both mapping-dependent and mapping-independent approaches across early developmental stages and a complete cell cycle time series, we found that engaged RNA polymerase across satellites is low; in contrast, TE transcription is abundant and serves as a boundary for changes in CpG methylation and centromere substructure. Together, these data reveal the dynamic relationship between transcriptionally active retroelement subclasses and DNA methylation, as well as potential mechanisms for the derivation and evolution of new repeat families and composite elements. Focusing on the emerging T2T-level assembly of the HG002 X chromosome, we reveal that a high level of repeat variation likely exists across the human population, including composite element copy numbers that affect gene copy number. Additionally, we highlight the impact of repeats on the structural diversity of the genome, revealing repeat expansions with extreme copy number differences between humans and primates while also providing high-confidence annotations of retroelement transduction events. CONCLUSION The comprehensive repeat annotations and updated repeat models described herein serve as a resource for expanding the compendium of human genome sequences and reveal the impact of specific repeats on the human genome. In developing this resource, we provide a methodological framework for assessing repeat variation within and between human genomes. The exhaustive assessment of the transcriptional landscape of repeats, at both the genome scale and locally, such as within centromeres, sets the stage for functional studies to disentangle the role transcription plays in the mechanisms essential for genome stability and chromosome segregation. Finally, our work demonstrates the need to increase efforts toward achieving T2T-level assemblies for nonhuman primates and other species to fully understand the complexity and impact of repeat-derived genomic innovations that define primate lineages, including humans. Telomere-to-telomere assembly of CHM13 supports repeat annotations and discoveries. The human reference T2T-CHM13 filled gaps and corrected collapsed regions (triangles) in GRCh38. Combining long read–based methylation calls, PRO-seq, and multilevel computational methods, we provide a compendium of human repeats, define retroelement expression and methylation profiles, and delineate locus-specific sites of nascent transcription genome-wide, including previously inaccessible centromeres. SINE, short interspersed element; SVA, SINE–variable number tandem repeat– Alu ; LINE, long interspersed element; LTR, long terminal repeat; TSS, transcription start site; pA, xxxxxxxxxxxxxxxx. 
    more » « less
  4. Abstract

    Topography affects abiotic conditions which can influence the structure, function and dynamics of ecological communities. An increasing number of studies have demonstrated biological consequences of fine‐scale topographic heterogeneity but we have a limited understanding of how these effects depend on the climate context.

    We merged high‐resolution (1 m2) data on topography and canopy height derived from airborne lidar with ground‐based data from 15 forest plots in Puerto Rico distributed along a precipitation gradient spanningc. 800–3,500 mm/year. Ground‐based data included species composition, estimated above‐ground biomass (AGB), and two key functional traits (wood density and leaf mass per area, LMA) that reflect resource‐use strategies and a trade‐off between hydraulic safety and hydraulic efficiency. We used hierarchical Bayesian models to evaluate how the interaction between topography × climate is related to metrics of forest structure (i.e. canopy height and AGB), as well as taxonomic and functional alpha‐ and beta‐diversity.

    Fine‐scale topography (characterized with the topographic wetness index, TWI) significantly affected forest structure and the strength (and in some cases direction) of these effects varied across the precipitation gradient. In all plots, canopy height increased with topographic wetness but the effect was much stronger in dry compared to wet forest plots. In dry forest plots, topographically wetter microsites also had higher levels of AGB but in wet forest plots, topographically drier microsites had higher AGB.

    Fine‐scale topography influenced functional composition but had only weak or non‐significant effects on taxonomic and functional alpha‐ and beta‐diversity. For instance, community‐weighted wood density followed a similar pattern to AGB across plots. We also found a marginally significant association between variation of wood density and topographic heterogeneity that depended on climate context.

    Synthesis. The effects of fine‐scale topographic heterogeneity on tropical forest structure and composition depend on the climate context. Our study demonstrates how a stronger integration of topographic heterogeneity across precipitation gradients could improve estimates of forest structure and biomass, and may provide insight to the ways that topography might mediate species responses to drought and climate change.

     
    more » « less
  5. Williamson, Grant (Ed.)

    Terrestrial LiDAR scans (TLS) offer a rich data source for high-fidelity vegetation characterization, addressing the limitations of traditional fuel sampling methods by capturing spatially explicit distributions that have a significant impact on fire behavior. However, large volumes of complex, high resolution data are difficult to use directly in wildland fire models. In this study, we introduce a novel method that employs a voxelization technique to convert high-resolution TLS data into fine-grained reference voxels, which are subsequently aggregated into lower-fidelity fuel cells for integration into physics-based fire models. This methodology aims to transform the complexity of TLS data into a format amenable for integration into wildland fire models, while retaining essential information about the spatial distribution of vegetation. We evaluate our approach by comparing a range of aggregate geometries in simulated burns to laboratory measurements. The results show insensitivity to fuel cell geometry at fine resolutions (2–8 cm), but we observe deviations in model behavior at the coarsest resolutions considered (16 cm). Our findings highlight the importance of capturing the fine scale spatial continuity present in heterogeneous tree canopies in order to accurately simulate fire behavior in coupled fire-atmosphere models. To the best of our knowledge, this is the first study to examine the use of TLS data to inform fuel inputs to a physics based model at a laboratory scale.

     
    more » « less