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1. Soil microbial responses to simulated climate change across polar ecosystems

   https://doi.org/10.1016/j.scitotenv.2023.168556  

   Khan, Ana; Ball, Becky A (January 2024, Science of The Total Environment)

   The polar regions are among the most biologically constrained in the world, characterized by cold temperatures and reduced liquid water. These limitations make them among the most climate-sensitive regions on Earth. Despite the overwhelming constraints from low temperatures and resource availability, many polar ecosystems, including polar deserts and tundras across the Arctic and Antarctic host uniquely diverse microbial communities. Polar regions have warmed more rapidly than the global average, with continued warming predicted for the future, which will reduce constraints on soil microbial activity. This could alter polar carbon (C) cycles, increasing CO2 emissions into the atmosphere. The objective of this study was to determine how increased temperature and moisture availability impacts microbial respiration in polar regions, by focusing on a diversity of ecosystem types (polar desert vs. tundra) that are geographically distant across Antarctica and the Arctic. We found that polar desert soil microbes were co-limited by temperature and moisture, though C and nitrogen (N) mineralization were only stimulated at the coldest and driest of the two polar deserts. Only bacterial biomass was impacted at the less harsh of the polar deserts, suggesting microbial activity is limited by factors other than temperature and moisture. Of the tundra sites, only the Antarctic tundra was climate-sensitive, where increased temperature decreased C and N mineralization while water availability stimulated it. The greater availability of soil resources and vegetative biomass at the Arctic tundra site might lead to its lack of climate-sensitivity. Notably, while C and N dynamics were climate-sensitive at some of our polar sites, P availability was not impacted at any of them. Our results demonstrate that soil microbial processes in some polar ecosystems are more sensitive to changes in temperature and moisture than others, with implications for soil C and N storage that are not uniformly predictable across polar regions. 

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2. Site-specific responses of fungal and bacterial abundances to experimental warming in litter and soil across Arctic and alpine tundra

   https://doi.org/10.1139/as-2020-0053  

   Jeanbille, Mathilde; Clemmensen, Karina; Juhanson, Jaanis; Michelsen, Anders; Cooper, Elisabeth J.; Henry, Greg H.R.; Hofgaard, Annika; Hollister, Robert D.; Jónsdóttir, Ingibjörg S.; Klanderud, Kari; et al (September 2022, Arctic Science)

   Vegetation change of the Arctic tundra due to global warming is a well-known process, but the implication for the belowground microbial communities, key in nutrient cycling and decomposition, is poorly understood. We characterized the fungal and bacterial abundances in litter and soil layers across 16 warming experimental sites at 12 circumpolar locations. We investigated the relationship between microbial abundances and nitrogen (N) and carbon (C) isotopic signatures, indicating shifts in microbial processes with warming. Microbial abundances were 2–3 orders of magnitude larger in litter than in soil. Local, site-dependent responses of microbial abundances were variable, and no general effect of warming was detected. The only generalizable trend across sites was a dependence between the warming response ratios and C:N ratio in controls, highlighting a legacy of the vegetation on the microbial response to warming. We detected a positive effect of warming on the litter mass and δ 15 N, which was linked to bacterial abundance under warmed conditions. This effect was stronger in experimental sites dominated by deciduous shrubs, suggesting an altered bacterial N-cycling with increased temperatures, mediated by the vegetation, and with possible consequences on ecosystem feedbacks to climate change. 

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3. Nitrogen fertilization reduces the standing biomass, abundance, and size of Cenococcum sclerotia: a ubiquitous but rarely quantified ectomycorrhizal soil carbon pool

   https://doi.org/10.1111/nph.70765  

   Fernandez, Christopher W; Kennedy, Peter G (February 2026, New Phytologist)

   Summary Unlike most ectomycorrhizal (EM) fungi,Cenococcum geophilumis a prolific producer of sclerotia, which represent a large and persistent, yet rarely quantified pool of EM fungal biomass and carbon in soils. How biomass of these asexual propagules is impacted by global change factors, such as anthropogenic nitrogen (N) deposition, remains unquantified.This study examined the effects of long‐term experimental N fertilization on the standing biomass, abundance, and size ofC. geophilumsclerotia in an oak (Quercusspp.) savanna ecosystem at Cedar Creek Ecosystem Science Reserve in Minnesota, USA.Standing sclerotia biomass in the control treatment averaged 192 g m⁻²(95% CI = 136–267 g m⁻²) and declined sharply under N enrichment, by 44% (95% CI = −53–79%) and 66% (95% CI = 39–82%) in the low N (5.4 g N m⁻² yr⁻¹) and high N (17 g N m⁻² yr⁻¹) treatments, respectively. Sclerotia abundance also declined under both fertilization levels by 58% (95% CI: 8–81%) and 62% (95% CI: 12–84%), while sclerotia diameter was significantly reduced only under high N.Given their high carbon content, melanization, and long persistence, the observed declines inC. geophilumsclerotia (c.84–127 g m⁻²) represent substantial losses from belowground carbon (C) pools. These findings indicate that chronic N deposition suppresses the formation of a functionally important and recalcitrant fungal structure, likely impacting soil C storage and mycorrhizal functional diversity. 

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4. Responses of tundra soil microbial communities to half a decade of experimental warming at two critical depths

   https://doi.org/10.1073/pnas.1901307116  

   Johnston, Eric R.; Hatt, Janet K.; He, Zhili; Wu, Liyou; Guo, Xue; Luo, Yiqi; Schuur, Edward A.; Tiedje, James M.; Zhou, Jizhong; Konstantinidis, Konstantinos T. (July 2019, Proceedings of the National Academy of Sciences)

   Northern-latitude tundra soils harbor substantial carbon (C) stocks that are highly susceptible to microbial degradation with rising global temperatures. Understanding the magnitude and direction (e.g., C release or sequestration) of the microbial responses to warming is necessary to accurately model climate change. In this study, Alaskan tundra soils were subjected to experimental in situ warming by ∼1.1 °C above ambient temperature, and the microbial communities were evaluated using metagenomics after 4.5 years, at 2 depths: 15 to 25 cm (active layer at outset of the experiment) and 45 to 55 cm (transition zone at the permafrost/active layer boundary at the outset of the experiment). In contrast to small or insignificant shifts after 1.5 years of warming, 4.5 years of warming resulted in significant changes to the abundances of functional traits and the corresponding taxa relative to control plots (no warming), and microbial shifts differed qualitatively between the two soil depths. At 15 to 25 cm, increased abundances of carbohydrate utilization genes were observed that correlated with (increased) measured ecosystem carbon respiration. At the 45- to 55-cm layer, increased methanogenesis potential was observed, which corresponded with a 3-fold increase in abundance of a single archaeal clade of the Methanosarcinales order, increased annual thaw duration (45.3 vs. 79.3 days), and increased CH 4 emissions. Collectively, these data demonstrate that the microbial responses to warming in tundra soil are rapid and markedly different between the 2 critical soil layers evaluated, and identify potential biomarkers for the corresponding microbial processes that could be important in modeling. 

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5. Assessing dynamic vegetation model parameter uncertainty across Alaskan arctic tundra plant communities

   https://doi.org/10.1002/EAP.2499  

   Euskirchen, Eugénie S.; Serbin, Shawn P.; Carman, Tobey B.; Fraterrigo, Jennifer M.; Genet, Hélène; Iversen, Colleen M.; Salmon, Verity; McGuire, A. David (November 2021, Ecological Applications)

   As the Arctic region moves into uncharted territory under a warming climate, it is important to refine the terrestrial biosphere models (TBMs) that help us understand and predict change. One fundamental uncertainty in TBMs relates to model parameters, configuration variables internal to the model whose value can be estimated from data. We incorporate a version of the Terrestrial Ecosystem Model (TEM) developed for arctic ecosystems into the Predictive Ecosystem Analyzer (PEcAn) framework. PEcAn treats model parameters as probability distributions, estimates parameters based on a synthesis of available field data, and then quantifies both model sensitivity and uncertainty to a given parameter or suite of parameters. We examined how variation in 21 parameters in the equation for gross primary production influenced model sensitivity and uncertainty in terms of two carbon fluxes (net primary productivity and heterotrophic respiration) and two carbon (C) pools (vegetation C and soil C). We set up different parameterizations of TEM across a range of tundra types (tussock tundra, heath tundra, wet sedge tundra, and shrub tundra) in northern Alaska, along a latitudinal transect extending from the coastal plain near Utqiaġvik to the southern foothills of the Brooks Range, to the Seward Peninsula. TEM was most sensitive to parameters related to the temperature regulation of photosynthesis. Model uncertainty was mostly due to parameters related to leaf area, temperature regulation of photosynthesis, and the stomatal responses to ambient light conditions. Our analysis also showed that sensitivity and uncertainty to a given parameter varied spatially. At some sites, model sensitivity and uncertainty tended to be connected to a wider range of parameters, underlining the importance of assessing tundra community processes across environmental gradients or geographic locations. Generally, across sites, the flux of net primary productivity (NPP) and pool of vegetation C had about equal uncertainty, while heterotrophic respiration had higher uncertainty than the pool of soil C. Our study illustrates the complexity inherent in evaluating parameter uncertainty across highly heterogeneous arctic tundra plant communities. It also provides a framework for iteratively testing how newly collected field data related to key parameters may result in more effective forecasting of Arctic change. 

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