skip to main content


Title: ORIGIN: Non-Rigid Network Alignment
Network alignment is a fundamental task in many high-impact applications. Most of the existing approaches either explicitly or implicitly consider the alignment matrix as a linear transformation to map one network to another, and might overlook the complicated alignment relationship across networks. On the other hand, node representation learning based alignment methods are hampered by the incomparability among the node representations of different networks. In this paper, we propose a unified semi-supervised deep model (ORIGIN) that simultaneously finds the non-rigid network alignment and learns node representations in multiple networks in a mutually beneficial way. The key idea is to learn node representations by the effective graph convolutional networks, which subsequently enable us to formulate network alignment as a point set alignment problem. The proposed method offers two distinctive advantages. First (node representations), unlike the existing graph convolutional networks that aggregate the node information within a single network, we can effectively aggregate the auxiliary information from multiple sources, achieving far-reaching node representations. Second (network alignment), guided by the highquality node representations, our proposed non-rigid point set alignment approach overcomes the bottleneck of the linear transformation assumption. We conduct extensive experiments that demonstrate the proposed non-rigid alignment method is (1) effective, outperforming both the state-of-the-art linear transformation-based methods and node representation based methods, and (2) efficient, with a comparable computational time between the proposed multi-network representation learning component and its single-network counterpart.  more » « less
Award ID(s):
1947135 1651203 1715385 1743040 2003924
NSF-PAR ID:
10159290
Author(s) / Creator(s):
; ; ; ;
Date Published:
Journal Name:
BigData
Page Range / eLocation ID:
998 to 1007
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Graph Neural Networks have recently become a prevailing paradigm for various high-impact graph analytical problems. Existing efforts can be mainly categorized as spectral-based and spatial-based methods. The major challenge for the former is to find an appropriate graph filter to distill discriminative information from input signals for learning. Recently, myriads of explorations are made to achieve better graph filters, e.g., Graph Convolutional Network (GCN), which leverages Chebyshev polynomial truncation to seek an approximation of graph filters and bridge these two families of methods. Nevertheless, it has been shown in recent studies that GCN and its variants are essentially employing fixed low-pass filters to perform information denoising. Thus their learning capability is rather limited and may over-smooth node representations at deeper layers. To tackle these problems, we develop a novel graph neural network framework AdaGNN with a well-designed adaptive frequency response filter. At its core, AdaGNN leverages a simple but elegant trainable filter that spans across multiple layers to capture the varying importance of different frequency components for node representation learning. The inherent differences among different feature channels are also well captured by the filter. As such, it empowers AdaGNN with stronger expressiveness and naturally alleviates the over-smoothing problem. We empirically validate the effectiveness of the proposed framework on various benchmark datasets. Theoretical analysis is also provided to show the superiority of the proposed AdaGNN. The open-source implementation of AdaGNN can be found here: https://github.com/yushundong/AdaGNN. 
    more » « less
  2. Network embedding has been an effective tool to analyze heterogeneous networks (HNs) by representing nodes in a low-dimensional space. Although many recent methods have been proposed for representation learning of HNs, there is still much room for improvement. Random walks based methods are currently popular methods to learn network embedding; however, they are random and limited by the length of sampled walks, and have difculty capturing network structural information. Some recent researches proposed using meta paths to express the sample relationship in HNs. Another popular graph learning model, the graph convolutional network (GCN) is known to be capable of better exploitation of network topology, but the current design of GCN is intended for homogenous networks. This paper proposes a novel combination of meta-graph and graph convolution, the meta-graph based graph convolutional networks (MGCN). To fully capture the complex long semantic information, MGCN utilizes different meta-graphs in HNs. As different meta-graphs express different semantic relationships, MGCN learns the weights of different meta-graphs to make up for the loss of semantics when applying GCN. In addition, we improve the current convolution design by adding node self-signicance. To validate our model in learning feature representation, we present comprehensive experiments on four real-world datasets and two representation tasks: classication and link prediction. WMGCN's representations can improve accuracy scores by up to around 10% in comparison to other popular representation learning models. What's more, WMGCN'feature learning outperforms other popular baselines. The experimental results clearly show our model is superior over other state-of-the-art representation learning algorithms. 
    more » « less
  3. null (Ed.)
    Learning the low-dimensional representations of graphs (i.e., network embedding) plays a critical role in network analysis and facilitates many downstream tasks. Recently graph convolutional networks (GCNs) have revolutionized the field of network embedding, and led to state-of-the-art performance in network analysis tasks such as link prediction and node classification. Nevertheless, most of the existing GCN-based network embedding methods are proposed for unsigned networks. However, in the real world, some of the networks are signed, where the links are annotated with different polarities, e.g., positive vs. negative. Since negative links may have different properties from the positive ones and can also significantly affect the quality of network embedding. Thus in this paper, we propose a novel network embedding framework SNEA to learn Signed Network Embedding via graph Attention. In particular, we propose a masked self-attentional layer, which leverages self-attention mechanism to estimate the importance coefficient for pair of nodes connected by different type of links during the embedding aggregation process. Then SNEA utilizes the masked self-attentional layers to aggregate more important information from neighboring nodes to generate the node embeddings based on balance theory. Experimental results demonstrate the effectiveness of the proposed framework through signed link prediction task on several real-world signed network datasets. 
    more » « less
  4. Graphs are powerful representations for relations among objects, which have attracted plenty of attention in both academia and industry. A fundamental challenge for graph learning is how to train an effective Graph Neural Network (GNN) encoder without labels, which are expensive and time consuming to obtain. Contrastive Learning (CL) is one of the most popular paradigms to address this challenge, which trains GNNs by discriminating positive and negative node pairs. Despite the success of recent CL methods, there are still two under-explored problems. Firstly, how to reduce the semantic error introduced by random topology based data augmentations. Traditional CL defines positive and negative node pairs via the node-level topological proximity, which is solely based on the graph topology regardless of the semantic information of node attributes, and thus some semantically similar nodes could be wrongly treated as negative pairs. Secondly, how to effectively model the multiplexity of the real-world graphs, where nodes are connected by various relations and each relation could form a homogeneous graph layer. To solve these problems, we propose a novel multiplex heterogeneous graph prototypical contrastive leaning (X-GOAL) framework to extract node embeddings. X-GOAL is comprised of two components: the GOAL framework, which learns node embeddings for each homogeneous graph layer, and an alignment regularization, which jointly models different layers by aligning layer-specific node embeddings. Specifically, the GOAL framework captures the node-level information by a succinct graph transformation technique, and captures the cluster-level information by pulling nodes within the same semantic cluster closer in the embedding space. The alignment regularization aligns embeddings across layers at both node level and cluster level. We evaluate the proposed X-GOAL on a variety of real-world datasets and downstream tasks to demonstrate the effectiveness of the X-GOAL framework. 
    more » « less
  5. null (Ed.)
    Multiplex networks are complex graph structures in which a set of entities are connected to each other via multiple types of relations, each relation representing a distinct layer. Such graphs are used to investigate many complex biological, social, and technological systems. In this work, we present a novel semi-supervised approach for structure-aware representation learning on multiplex networks. Our approach relies on maximizing the mutual information between local node-wise patch representations and label correlated structure-aware global graph representations to model the nodes and cluster structures jointly. Specifically, it leverages a novel cluster-aware, node-contextualized global graph summary generation strategy for effective joint-modeling of node and cluster representations across the layers of a multiplex network. Empirically, we demonstrate that the proposed architecture outperforms state-of-the-art methods in a range of tasks: classification, clustering, visualization, and similarity search on seven real-world multiplex networks for various experiment settings. 
    more » « less